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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Grba, D.N."

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Search Summary

This query matches 26 Structures.

Refinements

Structure Determination Methodology

experimental (26)

Scientific Name of Source Organism

	Bos taurus (16)
	Mus musculus (5)
	Yarrowia lipolytica (3)
	Hendrixvirus (2)
	Yarrowia lipolytica CLIB122 (1)

Taxonomy

	Eukaryota (24)
	Duplodnaviria (2)

Experimental Method

ELECTRON MICROSCOPY (26)

Polymer Entity Type

Protein (26)

Refinement Resolution (Å)

	2.0 - 2.5 (1)
	2.5 - 3.0 (12)
	3.0 - 3.5 (8)
	3.5 - 4.0 (5)

Release Date

2020 - 2024 (26)

Enzyme Classification Name

	Translocases (23)
	Oxidoreductases (18)

Membrane Protein Annotation

	PDBTM (21)
	mpstruc (5)
	OPM (4)
	MemProtMD (2)

Symmetry Type

	Asymmetric (24)
	Cyclic (1)
	Icosahedral (1)

SCOP Classification

	All alpha proteins (2)
	Membrane and cell surface proteins and peptides (2)
	Alpha and beta proteins (a+b) (1)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 26 Structures

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6YJ4	Download File View File

Structure of Yarrowia lipolytica complex I at 2.7 A

Hirst, J., Grba, D.

(2020) Nat Struct Mol Biol 27: 892-900

Released	2020-08-12
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Yarrowia lipolytica Yarrowia lipolytica CLIB122
Macromolecule	Unique protein chains: 42
Unique Ligands	3PE, CDL, EHZ, FES, FMN, LMT, NDP, PLC, SF4, ZN

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6YJ5	Download File View File

Focused refinement cryo-EM structure of the yeast mitochondrial complex I sub-stoichiometric sulfur transferase subunit

Hirst, J., Grba, D.

(2020) Nat Struct Mol Biol 27: 855-862

Released	2020-08-12
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Yarrowia lipolytica
Macromolecule	Rhodanese-like domain-containing protein (protein)

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7AK5	Download File View File

Cryo-EM structure of respiratory complex I in the deactive state from Mus musculus at 3.2 A

Yin, Z., Bridges, H.R., Grba, D., Hirst, J.

(2021) Nat Commun 12: 707-707

Released	2021-02-03
Method	ELECTRON MICROSCOPY 3.17 Å
Organisms	Mus musculus
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, ATP, CDL, EHZ, FES, FMN, NDP, PC1, SF4, ZN

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7AK6	Download File View File

Cryo-EM structure of ND6-P25L mutant respiratory complex I from Mus musculus at 3.8 A

Yin, Z., Bridges, H.R., Grba, D., Hirst, J.

(2021) Nat Commun 12: 707-707

Released	2021-02-03
Method	ELECTRON MICROSCOPY 3.82 Å
Organisms	Mus musculus
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, ATP, CDL, EHZ, FES, FMN, NDP, PC1, SF4, ZN

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7B0N	Download File View File

A 3.7-angstrom structure of Yarrowia lipolytica complex I with an R121M mutation in NUCM.

Hirst, J., Grba, D.

(2021) J Biological Chem 296: 100474-100474

Released	2021-03-10
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Yarrowia lipolytica
Macromolecule	Unique protein chains: 42
Unique Ligands	3PE, CDL, EHZ, FES, FMN, LMT, NDP, PLC, SF4, ZN

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7PSA	Download File View File

The acetogenin-bound complex I of Mus musculus resolved to 3.4 angstroms

Grba, D., Hirst, J.

(2022) J Biological Chem 298: 101602-101602

Released	2022-04-06
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Mus musculus
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, 88I, ATP, CDL, EHZ, FES, FMN, NDP, PC1, SF4, ZN

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8CEZ	Download File View File

HK97 Portal Protein In situ (prohead II)

Hawkins, D.E.D.P., Antson, A.A.

(2023) Nucleic Acids Res 51: 7025-7035

Released	2023-05-24
Method	ELECTRON MICROSCOPY 2.97 Å
Organisms	Hendrixvirus
Macromolecule	Portal protein (protein)

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8CFA	Download File View File

HK97 Prohead II as part of a DNA packaging complex

Hawkins, D.E.D.P., Antson, A.A.

(2023) Nucleic Acids Res 51: 7025-7035

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3.06 Å
Organisms	Hendrixvirus
Macromolecule	Major capsid subunit (protein)

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8OLT	Download File View File

Mitochondrial complex I from Mus musculus in the active state bound with piericidin A

Grba, D.N., Chung, I., Bridges, H.R., Agip, A.N.A., Hirst, J.

(2023) Sci Adv 9: eadi1359-eadi1359

Released	2023-08-09
Method	ELECTRON MICROSCOPY 2.84 Å
Organisms	Mus musculus
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, CDL, EHZ, FES, FMN, GTP, HQH, LMT, MG, MYR, NA, NDP, PC1, SF4, ZN

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8OM1	Download File View File

Mitochondrial complex I from Mus musculus in the active state

Grba, D.N., Chung, I., Bridges, H.R., Agip, A.N.A., Hirst, J.

(2023) Sci Adv 9: eadi1359-eadi1359

Released	2023-08-09
Method	ELECTRON MICROSCOPY 2.39 Å
Organisms	Mus musculus
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, CDL, DGT, EHZ, FES, FMN, LMT, MG, MYR, NA, NDP, PC1, SF4, ZN

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8Q0A	Download File View File

Inward-facing, closed proteoliposome complex I at 3.1 A. Initially purified in DDM.

Grba, D.N., Hirst, J.

(2024) Science 384: 1247-1253

Released	2024-06-05
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, CDL, CHD, DGT, EHZ, FES, FMN, K, MG, MYR, NDP, PC1, PLC, SF4, ZN

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8Q0F	Download File View File

Inward-facing, open2 proteoliposome complex I at 3.1 A. Initially purified in DDM.

Grba, D.N., Hirst, J.

(2024) Science 384: 1247-1253

Released	2024-06-05
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, CDL, CHD, DGT, EHZ, FES, FMN, K, MG, MYR, NDP, PC1, PLC, SF4, ZN

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8Q0J	Download File View File

Inward-facing, slack proteoliposome complex I at 3.8 A. Initially purified in DDM.

Grba, D.N., Hirst, J.

(2024) Science 384: 1247-1253

Released	2024-06-05
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, CDL, CHD, DGT, EHZ, FES, FMN, K, MG, MYR, NDP, PC1, SF4, ZN

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8Q0M	Download File View File

Outward-facing, closed proteoliposome complex I at 3.1 A. Initially purified in DDM.

Grba, D.N., Hirst, J.

(2024) Science 384: 1247-1253

Released	2024-06-05
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, CDL, CHD, DGT, EHZ, FES, FMN, K, MG, MYR, NDP, PC1, PLC, SF4, U10, ZN

Explore in 3D

8Q0O	Download File View File

Outward-facing, open2 proteoliposome complex I at 3.1 A. Initially purified in DDM.

Grba, D.N., Hirst, J.

(2024) Science 384: 1247-1253

Released	2024-06-05
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, CDL, CHD, DGT, EHZ, FES, FMN, K, MG, MYR, NDP, PC1, PLC, SF4, ZN

Explore in 3D

8Q0Q	Download File View File

Outward-facing, slack proteoliposome complex I at 3.6 A. Initially purified in DDM

Grba, D.N., Hirst, J.

(2024) Science 384: 1247-1253

Released	2024-06-05
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, CDL, CHD, DGT, EHZ, FES, FMN, K, MG, MYR, NDP, PC1, SF4, ZN

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8Q1P	Download File View File

Inward-facing, open2 proteoliposome complex I at 2.9 A, after deactivation treatment. Initially purified in LMNG.

Grba, D.N., Hirst, J.

(2024) Science 384: 1247-1253

Released	2024-06-05
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, CDL, CHD, DGT, EHZ, FES, FMN, K, MG, MYR, NDP, PC1, PLC, SF4, ZN

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8Q1U	Download File View File

Inward-facing, open1 proteoliposome complex I at 3.3 A, after deactivation treatment. Initially purified in LMNG.

Grba, D.N., Hirst, J.

(2024) Science 384: 1247-1253

Released	2024-06-05
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, CDL, CHD, DGT, EHZ, FES, FMN, K, MG, MYR, NDP, PC1, PLC, SF4, U10, ZN

Explore in 3D

8Q1Y	Download File View File

Outward-facing, open2 proteoliposome complex I at 2.6 A, after deactivation treatment. Initially purified in LMNG.

Grba, D.N., Hirst, J.

(2024) Science 384: 1247-1253

Released	2024-06-05
Method	ELECTRON MICROSCOPY 2.6 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, CDL, CHD, DGT, EHZ, FES, FMN, K, MG, MYR, NDP, PC1, PLC, SF4, ZN

Explore in 3D

8Q25	Download File View File

Outward-facing, open1 proteoliposome complex I at 2.8 A, after deactivation treatment. Initially purified in LMNG.

Grba, D.N., Hirst, J.

(2024) Science 384: 1247-1253

Released	2024-06-05
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, CDL, CHD, DGT, EHZ, FES, FMN, K, MG, MYR, NDP, PC1, PLC, SF4, U10, ZN

Explore in 3D

8Q45	Download File View File

Inward-facing, closed proteoliposome complex I at 2.7 A. Initially purified in LMNG.

Grba, D.N., Hirst, J.

(2024) Science 384: 1247-1253

Released	2024-06-05
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, CDL, CHD, DGT, EHZ, FES, FMN, K, MG, MYR, NDP, PC1, PLC, SF4, U10, ZN

Explore in 3D

8Q46	Download File View File

Inward-facing, open2 proteoliposome complex I at 2.6 A. Initially purified in LMNG.

Grba, D.N., Hirst, J.

(2024) Science 384: 1247-1253

Released	2024-06-05
Method	ELECTRON MICROSCOPY 2.6 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, CDL, CHD, DGT, EHZ, FES, FMN, K, MG, MYR, NDP, PC1, PLC, SF4, ZN

Explore in 3D

8Q47	Download File View File

Inward-facing, open1 proteoliposome complex I at 2.9 A. Initially purified in LMNG.

Grba, D.N., Hirst, J.

(2024) Science 384: 1247-1253

Released	2024-06-05
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, CDL, CHD, DGT, EHZ, FES, FMN, K, MG, MYR, NDP, PC1, PLC, SF4, U10, ZN

Explore in 3D

8Q48	Download File View File

Outward-facing, closed proteoliposome complex I at 2.5 A. Initially purified in LMNG.

Grba, D.N., Hirst, J.

(2024) Science 384: 1247-1253

Released	2024-06-05
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, CDL, CHD, DGT, EHZ, FES, FMN, K, MG, MYR, NDP, PC1, PLC, SF4, U10, ZN

Explore in 3D

8Q49	Download File View File

Outward-facing, open2 proteoliposome complex I at 2.6 A. Initially purified in LMNG.

Grba, D.N., Hirst, J.

(2024) Science 384: 1247-1253

Released	2024-06-05
Method	ELECTRON MICROSCOPY 2.6 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 44
Unique Ligands	3PE, CDL, CHD, DGT, EHZ, FES, FMN, FVH, K, MG, MYR, PC1, PLC, SF4, ZN

1 to 25 of 26 Structures

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