RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Hosfield, C.M."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 46 Structures.

Refinements

Structure Determination Methodology

experimental (46)

Scientific Name of Source Organism

	Homo sapiens (13)
	Momordica charantia (7)
	Zika virus (7)
	Escherichia coli K-12 (6)
	Mus musculus (4)
	Severe acute respiratory syndrome coronavirus 2 (4)
	Danio rerio (3)
	Escherichia coli O157:H7 (3)
	Scylla paramamosain (3)
	Mus musculus domesticus (2)

More...

Taxonomy

	Eukaryota (36)
	Bacteria (11)
	Riboviria (11)
	Varidnaviria (1)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (46)

Polymer Entity Type

	Protein (46)
	DNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (18)
	2.0 - 2.5 (9)
	2.5 - 3.0 (6)
	3.0 - 3.5 (3)
	> 4.5 (1)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (5)
	2015 - 2019 (25)
	2020 - 2024 (15)

Enzyme Classification Name

	Hydrolases (11)
	Transferases (2)
	Isomerases (1)
	Lyases (1)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (35)
	Cyclic (7)
	Dihedral (5)

SCOP Classification

	Alpha and beta proteins (a/b) (9)
	Alpha and beta proteins (a+b) (7)
	All beta proteins (4)
	Artifacts (1)

AllSelected

1 to 25 of 46 Structures

Page 1 of 2

Sort by

Explore in 3D

3C3V	Download File View File

Crystal structure of peanut major allergen ara h 3

Jin, T., Zhang, Y.

(2009) Mol Immunol 46: 1796-1804

Released	2009-02-24
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Arachis hypogaea
Macromolecule	Arachin Arah3 isoform (protein)
Unique Ligands	NA

Explore in 3D

4IFP	Download File View File

X-ray Crystal Structure of Human NLRP1 CARD Domain

Jin, T., Curry, J., Smith, P., Jiang, J., Xiao, T.

(2013) Proteins 81: 1266-1270

Released	2013-04-03
Method	X-RAY DIFFRACTION 1.9948 Å
Organisms	Escherichia coli K-12 Homo sapiens
Macromolecule	Maltose-binding periplasmic protein,NACHT, LRR and PYD domains-containing protein 1 (protein)
Unique Ligands	MLI
Unique branched monosaccharides	GLC

Explore in 3D

4IKM	Download File View File

X-ray structure of CARD8 CARD domain

Jin, T., Huang, M., Smith, P., Jiang, J., Xiao, T.

(2013) Acta Crystallogr Sect F Struct Biol Cryst Commun 69: 482-487

Released	2013-05-08
Method	X-RAY DIFFRACTION 2.4606 Å
Organisms	Escherichia coli K-12 Homo sapiens
Macromolecule	Maltose-binding periplasmic protein, Caspase recruitment domain-containing protein 8 (protein)
Unique Ligands	EDO, IOD
Unique branched monosaccharides	GLC

Explore in 3D

4IRL	Download File View File

X-ray structure of the CARD domain of zebrafish GBP-NLRP1 like protein

Jin, T., Huang, M., Smith, P., Xiao, T.

(2013) Acta Crystallogr Sect F Struct Biol Cryst Commun 69: 855-860

Released	2013-08-07
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Danio rerio Escherichia coli K-12
Macromolecule	Maltose-binding periplasmic protein, Novel protein similar to vertebrate guanylate binding protein family (protein)
Unique Ligands	ACT, EDO, MLI, NA, PEG
Unique branched monosaccharides	GLC

Explore in 3D

4OI7	Download File View File

RAGE recognizes nucleic acids and promotes inflammatory responses to DNA

Jin, T., Jiang, J., Xiao, T.

(2013) J Exp Med 210: 2447-2463

Released	2014-04-30
Method	X-RAY DIFFRACTION 3.104 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein) 5'-D(CPAPCPGPTPTPCPGPTPAPGPCPAPTPCPGPTPTPGPCPAPG)-3' (nucleic acid) 5'-D(CPTPGPCPAPAPCPGPAPTPGPCPTPAPCPGPAPAPCPGPTPG)-3' (nucleic acid)
Unique Ligands	EDO

Explore in 3D

4OI8	Download File View File

RAGE is a nucleic acid receptor that promotes inflammatory responses to DNA.

Jin, T., Jiang, J., Xiao, T.

(2013) J Exp Med 210: 2447-2463

Released	2014-04-30
Method	X-RAY DIFFRACTION 3.101 Å
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein) 5'-D(CPCPAPTPGPAPCPTPGPTPAPGPGPAPAPAPCPTPCPTPAPGPA)-3' (nucleic acid) 5'-D(CPTPCPTPAPGPAPGPTPTPTPCPCPTPAPCPAPGPTPCPAPTPG)-3' (nucleic acid)

Explore in 3D

4XHS	Download File View File

Crystal structure of human NLRP12 PYD domain and implication in homotypic interaction

Jin, T., Huang, M., Jiang, J., Xiao, T.

To be published

Released	2016-01-27
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli O157:H7 Homo sapiens
Macromolecule	Maltose-binding periplasmic protein,NACHT, LRR and PYD domains-containing protein 12 (protein)
Unique Ligands	FMT, NA
Unique branched monosaccharides	GLC

Explore in 3D

5GOZ	Download File View File

Crystal structure of ZIKV NS5 Methyltransferase in complex with GTP and SAH

Zhang, C., Jin, T.

(2017) Biochem Biophys Res Commun 492: 624-630

Released	2016-12-07
Method	X-RAY DIFFRACTION 2.049 Å
Organisms	Zika virus
Macromolecule	RNA-directed RNA polymerase NS5 (protein)
Unique Ligands	GTP, PO4, POP, SAH, SIN

Explore in 3D

5GP1	Download File View File

Crystal structure of ZIKV NS5 Methyltransferase in complex with GTP and SAH

Zhang, C., Jin, T.

(2017) Biochem Biophys Res Commun 492: 624-630

Released	2016-12-07
Method	X-RAY DIFFRACTION 2.444 Å
Organisms	Zika virus
Macromolecule	RNA-directed RNA polymerase NS5 (protein)
Unique Ligands	GTA, NI, SAH, SO4

Explore in 3D

5GPP	Download File View File

Crystal structure of zebrafish ASC PYD domain

Jin, T., Li, Y.

(2018) FEBS J 285: 2691-2707

Released	2017-08-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Danio rerio Escherichia coli O157:H7
Macromolecule	Maltose-binding periplasmic protein,Apoptosis-associated speck-like protein containing a CARD (protein)
Unique Ligands	ACT, SO4
Unique branched monosaccharides	GLC

Explore in 3D

5GPQ	Download File View File

Crystal Structure of zebrafish ASC CARD Domain

Jin, T., Li, Y.

(2018) FEBS J 285: 2691-2707

Released	2017-08-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Danio rerio Escherichia coli O157:H7
Macromolecule	Maltose-binding periplasmic protein,Apoptosis-associated speck-like protein containing a CARD (protein)
Unique Ligands	CIT
Unique branched monosaccharides	GLC

Explore in 3D

5JWH	Download File View File

Apo structure

Cao, X., Li, Y., Jin, T.

(2016) Nucleic Acids Res 44: 10505-10514

Released	2016-11-09
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Zika virus
Macromolecule	NS3 helicase (protein)
Unique Ligands	EDO

Explore in 3D

5K8I	Download File View File

Crystal structure of ZIKV NS3 helicase in complex with ATP and Mn2+

Cao, X., Li, Y., Jin, T.

(2016) Nucleic Acids Res 44: 10505-10514

Released	2016-11-09
Method	X-RAY DIFFRACTION 1.694 Å
Organisms	Zika virus
Macromolecule	ZIKV NS3 helicase (protein)
Unique Ligands	ATP, CL, MN

Explore in 3D

5K8L	Download File View File

Crystal structure of ZIKV NS3 helicase in complex with GTP-gammar S

Cao, X., Li, Y., Jin, T.

(2016) Nucleic Acids Res 44: 10505-10514

Released	2016-11-09
Method	X-RAY DIFFRACTION 1.751 Å
Organisms	Zika virus
Macromolecule	ZIKV NS3 helicase (protein)
Unique Ligands	CL, EDO, GSP, MPD

Explore in 3D

5K8T	Download File View File

Crystal structure of ZIKV NS3 helicase in complex with GTP-gammar S and an magnesium ion

Cao, X., Li, Y., Jin, T.

(2016) Nucleic Acids Res 44: 10505-10514

Released	2016-11-09
Method	X-RAY DIFFRACTION 1.848 Å
Organisms	Zika virus
Macromolecule	ZIKV NS3 helicase (protein)
Unique Ligands	CL, GSP, MG

Explore in 3D

5K8U	Download File View File

Crystal structure of ZIKV NS3 helicase in complex with ADP and Mn2+

Cao, X., Li, Y., Jin, T.

(2016) Nucleic Acids Res 44: 10505-10514

Released	2016-11-09
Method	X-RAY DIFFRACTION 1.601 Å
Organisms	Zika virus
Macromolecule	zika virus NS3 helicase (protein)
Unique Ligands	ADP, CL, EDO, MN

Explore in 3D

5VR3	Download File View File

Crystal structure of the BRS domain of BRAF

Thevakumaran, N., Maisonneuve, P., Kurinov, I., Lavoie, H., Marullo, S.A., Sahmi, M., Jin, T., Therrien, M., Sicheri, F.

(2018) Nature 554: 549-553

Released	2018-02-14
Method	X-RAY DIFFRACTION 2.102 Å
Organisms	Homo sapiens
Macromolecule	BRAF (protein)
Unique Ligands	SO4

Explore in 3D

5VYK	Download File View File

Crystal structure of the BRS domain of BRAF in complex with the CC-SAM domain of KSR1

Maisonneuve, P., Kurinov, I., Marullo, S.A., Lavoie, H., Thevakumaran, N., Sahmi, M., Jin, T., Therrien, M., SIcheri, F.

(2018) Nature 554: 549-553

Released	2018-02-14
Method	X-RAY DIFFRACTION 1.749 Å
Organisms	Homo sapiens
Macromolecule	Chimera protein of BRS domain of BRAF and CC-SAM domain of KSR1,Serine/threonine-protein kinase B-raf (protein)
Unique Ligands	GOL

Explore in 3D

5WPW	Download File View File

Crystal structure of coconut allergen cocosin

Jin, T., Zhang, Y.

(2017) J Agric Food Chem 65: 7560-7568

Released	2017-10-25
Method	X-RAY DIFFRACTION 1.847 Å
Organisms	Cocos nucifera
Macromolecule	11S globulin isoform 1 (protein)

Explore in 3D

5Y2G	Download File View File

Structure of MBP tagged GBS CAMP

Jin, T., Li, Y.

(2019) Acta Crystallogr D Struct Biol 75: 772-781

Released	2019-02-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli K-12 Streptococcus agalactiae
Macromolecule	Maltose-binding periplasmic protein,Protein B (protein)
Unique Ligands	SO4
Unique branched monosaccharides	GLC

Explore in 3D

5Y37	Download File View File

Crystal structure of GBS GAPDH

Jin, T., Zhou, K.

(2018) Acta Crystallogr F Struct Biol Commun 74: 236-244

Released	2018-04-18
Method	X-RAY DIFFRACTION 1.36 Å
Organisms	Streptococcus agalactiae NEM316
Macromolecule	Glyceraldehyde-3-phosphate dehydrogenase (protein)
Unique Ligands	NAD, SO4

Explore in 3D

5Y3S	Download File View File

Crystal structure of human NLRP1 leucine rich repeat domain

Jin, T., Xiao, T.S.

To be published

Released	2018-08-01
Method	X-RAY DIFFRACTION 2.451 Å
Organisms	Homo sapiens
Macromolecule	NACHT, LRR and PYD domains-containing protein 1 (protein)
Unique Ligands	NA, PO4

Explore in 3D

5YEV	Download File View File

Murine DR3 death domain

Yin, X., Jin, T.

(2019) FEBS J 286: 2593-2610

Released	2018-09-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	TNFRSF25 death domain (protein)
Unique Ligands	SO4

Explore in 3D

5YGS	Download File View File

Human TNFRSF25 death domain

Yin, X., Jin, T.

(2019) FEBS J 286: 2593-2610

Released	2018-10-03
Method	X-RAY DIFFRACTION 2.691 Å
Organisms	Homo sapiens
Macromolecule	Human TNRSF25 death domain (protein)
Unique Ligands	SO4
Unique branched monosaccharides	GLC

Explore in 3D

5YZP	Download File View File

Crystal structure of p204 HINa domain

Jin, T.

(2021) Nucleic Acids Res

Released	2018-12-19
Method	X-RAY DIFFRACTION 1.581 Å
Organisms	Mus musculus domesticus
Macromolecule	Ifi204 (protein)
Unique Ligands	ACT, EDO

1 to 25 of 46 Structures

Page 1 of 2

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification