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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Ifuku, K."

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Chaetoceros neogracilis (7)
	Acaryochloris marina MBIC11017 (1)
	Cyanidium caldarium (1)
	Nicotiana tabacum (1)
	Thalassiosira pseudonana CCMP1335 (1)

Taxonomy

	Eukaryota (10)
	Bacteria (1)

Experimental Method

	ELECTRON MICROSCOPY (10)
	X-RAY DIFFRACTION (1)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (2)
	2.5 - 3.0 (4)
	3.0 - 3.5 (1)
	3.5 - 4.0 (2)

Release Date

	2000 - 2004 (1)
	2015 - 2019 (3)
	2020 - 2024 (7)

Enzyme Classification Name

Oxidoreductases (3)

Membrane Protein Annotation

	OPM (5)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (7)
	Cyclic (4)

SCOP Classification

Alpha and beta proteins (a+b) (1)

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1 to 11 of 11 Structures

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1V2B	Download File View File

Crystal Structure of PsbP Protein in the Oxygen-Evolving Complex of Photosystem II from Higher Plants

Ifuku, K., Nakatsu, T., Kato, H., Sato, F., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) EMBO Rep 5: 362-367

Released	2004-05-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Nicotiana tabacum
Macromolecule	23-kDa polypeptide of photosystem II oxygen-evolving complex (protein)
Unique Ligands	GLC, SO4

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6J3Y	Download File View File

Structure of C2S2-type PSII-FCPII supercomplex from diatom

Nagao, R., Kato, K., Shen, J.R., Miyazaki, N., Akita, F.

(2019) Nat Plants 5: 890-901

Released	2019-08-07
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Chaetoceros neogracilis
Macromolecule	Unique protein chains: 25
Unique Ligands	A86, BCR, BCT, CLA, DGD, FE2, HEM, LHG, LMG, LMU, OEX, PHO, PL9, SQD

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6J3Z	Download File View File

Structure of C2S1M1-type PSII-FCPII supercomplex from diatom

Nagao, R., Kato, K., Shen, J.R., Miyazaki, N., Akita, F.

(2019) Nat Plants 5: 890-901

Released	2019-08-07
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Chaetoceros neogracilis
Macromolecule	Unique protein chains: 28
Unique Ligands	A86, BCR, BCT, CLA, DGD, FE2, HEM, LHG, LMG, LMU, OEX, PHO, PL9, SQD

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6J40	Download File View File

Structure of C2S2M2-type PSII-FCPII supercomplex from diatom

Nagao, R., Kato, K., Shen, J.R., Miyazaki, N., Akita, F.

(2019) Nat Plants 5: 890-901

Released	2019-08-07
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Chaetoceros neogracilis
Macromolecule	Unique protein chains: 28
Unique Ligands	A86, BCR, BCT, CLA, DGD, FE2, HEM, LHG, LMG, LMU, OEX, PHO, PL9, SQD

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6L4T	Download File View File

Structure of the peripheral FCPI from diatom

Nagao, R., Kato, K., Miyazaki, N., Akita, F., Shen, J.R.

(2020) Nat Commun

Released	2020-05-20
Method	ELECTRON MICROSCOPY 2.6 Å
Organisms	Chaetoceros neogracilis
Macromolecule	Unique protein chains: 10
Unique Ligands	A86, CLA, DD6, KC1, LHG, LMG, LMT

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6L4U	Download File View File

Structure of the PSI-FCPI supercomplex from diatom

Nagao, R., Kato, K., Miyazaki, N., Akita, F., Shen, J.R.

(2020) Nat Commun

Released	2020-05-20
Method	ELECTRON MICROSCOPY 2.4 Å
Organisms	Chaetoceros neogracilis
Macromolecule	Unique protein chains: 28
Unique Ligands	A86, BCR, CL0, CLA, DD6, KC1, LHG, LMG, LMT, PQN, SF4

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7COY	Download File View File

Structure of the far-red light utilizing photosystem I of Acaryochloris marina

Kawakami, K., Yonekura, K., Hamaguchi, T., Kashino, Y., Shinzawa-Itoh, K., Inoue-Kashino, N., Itoh, S., Ifuku, K., Yamashita, E.

(2021) Nat Commun 12: 2333-2333

Released	2021-03-31
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Acaryochloris marina MBIC11017
Macromolecule	Unique protein chains: 11
Unique Ligands	CL7, G9R, LHG, LMG, PHO, PQN, SF4, UNL

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7VD5	Download File View File

Structure of C2S2M2-type PSII-FCPII supercomplex from diatom

Nagao, R., Kato, K., Akita, F., Miyazaki, N., Shen, J.R.

(2022) Nat Commun 13: 1764

Released	2022-03-02
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Chaetoceros neogracilis
Macromolecule	Unique protein chains: 34
Unique Ligands	A86, BCR, BCT, CLA, DD6, DGD, FE2, HEM, KC1, LHG, LMG, LMU, OEX, PHO, PL9, SQD, UNL

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7VD6	Download File View File

Structure of S1M1-type FCPII complex from diatom

Nagao, R., Kato, K., Akita, F., Miyazaki, N., Shen, J.R.

(2022) Nat Commun 13: 1764

Released	2022-03-02
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Chaetoceros neogracilis
Macromolecule	Unique protein chains: 7
Unique Ligands	A86, CLA, DD6, KC1, LHG, LMG, LMU, SQD, UNL

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8WEY	Download File View File

PSI-LHCI of the red alga Cyanidium caldarium RK-1 (NIES-2137)

Kato, K., Hamaguchi, T., Nakajima, Y., Kawakami, K., Yonekura, K., Shen, J.R., Nagao, R.

(2024) Proc Natl Acad Sci U S A 121: e2319658121-e2319658121

Released	2024-02-14
Method	ELECTRON MICROSCOPY 1.92 Å
Organisms	Cyanidium caldarium
Macromolecule	Unique protein chains: 15
Unique Ligands	5X6, BCR, CL0, CLA, DGD, LHG, LMT, PQN, SF4, UNL

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8XLS	Download File View File

PSI-FCPI of the diatom Thalassiosira pseudonana CCMP1335

Kato, K., Nakajima, Y., Shen, J.R., Nagao, R.

(2024) Elife 13:

Released	2024-10-30
Method	ELECTRON MICROSCOPY 2.3 Å
Organisms	Thalassiosira pseudonana CCMP1335
Macromolecule	Unique protein chains: 17
Unique Ligands	5X6, A86, BCR, CL0, CLA, DD6, DGD, KC1, LHG, LMG, LMT, PQN, SF4, UNL

1 to 11 of 11 Structures

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