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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Ma, F."

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Search Summary

This query matches 27 Structures.

Refinements

Structure Determination Methodology

experimental (27)

Scientific Name of Source Organism

	Homo sapiens (7)
	Acinetobacter baumannii (3)
	Escherichia coli (3)
	Staphylococcus aureus (3)
	Mycobacterium tuberculosis (2)
	Roseiflexus castenholzii (2)
	Roseospirillum parvum (2)
	Thermochromatium tepidum (2)
	Halorhodospira halochloris (1)
	Helicobacter pylori (1)

More...

Taxonomy

	Bacteria (19)
	Eukaryota (8)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (19)
	ELECTRON MICROSCOPY (8)

Polymer Entity Type

	Protein (27)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (10)
	2.0 - 2.5 (7)
	2.5 - 3.0 (5)
	3.0 - 3.5 (3)
	3.5 - 4.0 (1)

Release Date

	2015 - 2019 (4)
	2020 - 2024 (13)
	2025 - 2029 (10)

Enzyme Classification Name

	Oxidoreductases (11)
	Hydrolases (4)
	Transferases (3)

Membrane Protein Annotation

	PDBTM (6)
	MemProtMD (2)

Symmetry Type

	Asymmetric (11)
	Cyclic (13)
	Dihedral (3)

SCOP Classification

	All beta proteins (2)
	Alpha and beta proteins (a+b) (2)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 27 Structures

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4QGU	Download File View File

protein domain complex with ssDNA

Ni, X., Ru, H., Zhao, L., Shaw, N., Ding, W., Songying, O., Liu, Z.-J.

(2016) J Mol Cell Biol 8: 51-61

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.545 Å
Organisms	Homo sapiens
Macromolecule	Gamma-interferon-inducible protein 16 (protein) DNA (5'-D(PAPGPGPCPCPGPGPCPGPTPGPA)-3') (nucleic acid)

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5DRB	Download File View File

Crystal structure of WNK1 in complex with WNK463

Kohls, D., Xie, X.

(2016) Nat Chem Biol 12: 896-898

Released	2016-09-07
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Rattus norvegicus
Macromolecule	Serine/threonine-protein kinase WNK1 (protein)
Unique Ligands	5FJ

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5Z12	Download File View File

A structure of FXR/RXR

Lu, Y., Li, Y.

(2018) J Biol Chem 293: 12535-12541

Released	2018-07-04
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	Bile acid receptor (protein) Peptide from Nuclear receptor coactivator 2 (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	33Y, 9CR

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5ZOI	Download File View File

Crystal Structure of alpha1,3-Fucosyltransferase

Tan, Y., Yang, G.

(2019) Sci Adv 5: eaaw8451-eaaw8451

Released	2019-06-26
Method	X-RAY DIFFRACTION 3.19 Å
Organisms	Helicobacter pylori
Macromolecule	Alpha-(1,3)-fucosyltransferase FucT (protein)
Unique Ligands	C06

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7MF1	Download File View File

Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody 47D1

Yuan, M., Zhu, X., Wilson, I.A.

(2021) Cell Rep 35: 109109-109109

Released	2021-05-12
Method	X-RAY DIFFRACTION 2.092 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	47D1 Fab heavy chain (protein) 47D1 Fab light chain (protein) Spike protein S1 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	FUC, NAG

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8IL3	Download File View File

Cryo-EM structure of CD38 in complex with FTL004

Yang, J., Wang, Y., Zhang, G.

(2022) J Hematol Oncol 15: 177-177

Released	2023-03-29
Method	ELECTRON MICROSCOPY 3.86 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 (protein) Heavy chain (protein) Light chain (protein)

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8IUG	Download File View File

Cryo-EM structure of the RC-LH core complex from roseiflexus castenholzii

Wang, G.-L., Qi, C.-H., Yu, L.-J.

(2023) J Biol Chem 299: 105057-105057

Released	2023-11-22
Method	ELECTRON MICROSCOPY 2.86 Å
Organisms	Roseiflexus castenholzii
Macromolecule	Unique protein chains: 8
Unique Ligands	BCL, BGL, BPH, CA, HEC, LHG, LMT, MN, MQE, PEF, PGV, U42, U4Z, UNL

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8IUN	Download File View File

Cryo-EM structure of the CRT-LESS RC-LH core complex from roseiflexus castenholzii

Wang, G.-L., Qi, C.-H., Yu, L.-J.

(2023) J Biol Chem 299: 105057-105057

Released	2023-12-06
Method	ELECTRON MICROSCOPY 2.85 Å
Organisms	Roseiflexus castenholzii
Macromolecule	Unique protein chains: 7
Unique Ligands	BCL, BGL, BPH, CA, CDL, HEC, LHG, LMT, MN, MQE, PEF, PGV, U4Z, UNL

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8JC8	Download File View File

Cryo-EM structure of the LH1 complex from thermochromatium tepidum

Wang, G.-L., Yan, Y.-H., Yu, L.-J.

(2024) Biochim Biophys Acta Bioenerg 1865: 149050-149050

Released	2024-11-13
Method	ELECTRON MICROSCOPY 3.11 Å
Organisms	Thermochromatium tepidum
Macromolecule	LH1 alpha polypeptide (protein) LH1 beta polypeptide (protein)
Unique Ligands	8K6, BCL, CA, CRT

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8JC9	Download File View File

Cryo-EM structure of the LH1 complex from thermochromatium tepidum

Wang, G.-L., Yan, Y.-H., Yu, L.-J.

(2024) Biochim Biophys Acta Bioenerg 1865: 149050-149050

Released	2024-11-13
Method	ELECTRON MICROSCOPY 3.32 Å
Organisms	Thermochromatium tepidum
Macromolecule	LH1 alpha polypeptide (protein) LH1 beta polypeptide (protein)
Unique Ligands	BCL, CA, CRT, D12

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8K5O	Download File View File

Cryo-EM structure of the RC-LH core comples from Halorhodospira halochloris

Wang, G.-L., Qi, C.-H., Yu, L.-J.

(2024) J Integr Plant Biol 66: 2262-2272

Released	2024-05-22
Method	ELECTRON MICROSCOPY 2.42 Å
Organisms	Halorhodospira halochloris
Macromolecule	Unique protein chains: 11
Unique Ligands	A1LZM, A1LZP, A1LZQ, BGL, CDL, FE, HEC, LHG, LYC, MQ8, PEF, PGV, UNL, UQ8

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8UN3	Download File View File

KRAS-G13D-GDP in complex with Cpd5 (1-((S)-10-(6-amino-4-methyl-3-(trifluoromethyl)pyridin-2-yl)-11-chloro-7-(((2S,4R)-4-fluoro-1-methylpyrrolidin-2-yl)methoxy)-3,4,13,13a-tetrahydropyrazino[2',1':3,4][1,4]oxazepino[5,6,7-de]quinazolin-2(1H)-yl)prop-2-en-1-one)

Ultsch, M.H.

(2024) ACS Med Chem Lett 15: 21-28

Released	2023-12-20
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein)
Unique Ligands	CL, EDO, GDP, MG, XOI

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8UN4	Download File View File

KRAS-G13D-GDP in complex with Cpd36 ((E)-1-((3S)-4-(7-(6-amino-4-methyl-3-(trifluoromethyl)pyridin-2-yl)-6-chloro-8-fluoro-2-(((S)-2-methylenetetrahydro-1H-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3-methylpiperazin-1-yl)-3-(4-((dimethylamino)methyl)-5-methylpyridin-2-yl)prop-2-en-1-one)

Ultsch, M.H.

(2024) ACS Med Chem Lett 15: 21-28

Released	2023-12-20
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein)
Unique Ligands	GDP, MG, XV3

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8UN5	Download File View File

KRAS-G13D-GDP in complex with Cpd38 ((E)-1-((3S)-4-(7-(6-amino-4-methyl-3-(trifluoromethyl)pyridin-2-yl)-6-chloro-8-fluoro-2-(((S)-2-methylenetetrahydro-1H-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3-methylpiperazin-1-yl)-3-(1,2,3,4-tetrahydroisoquinolin-8-yl)prop-2-en-1-one)

Ultsch, M.H.

(2024) ACS Med Chem Lett 15: 21-28

Released	2023-12-20
Method	X-RAY DIFFRACTION 1.31 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein)
Unique Ligands	GDP, GOL, MG, XQ6

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8ZJW	Download File View File

Cryo-EM structure of photosynthetic LH1' complex of Roseospirillum parvum

Wang, G.-L., Wang, X.-P., Yu, L.-J.

(2024) Commun Biol 7: 1658-1658

Released	2025-01-22
Method	ELECTRON MICROSCOPY 2.35 Å
Organisms	Roseospirillum parvum
Macromolecule	Alpha subunit of light-harvesting 1 complex (protein) Beta subunit of light-harvesting 1 complex (protein)
Unique Ligands	BCL, CRT

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8ZK2	Download File View File

Cryo-EM structure of photosynthetic LH1-RC core complex of Roseospirillum parvum

Wang, G.-L., Wang, X.-P., Yu, L.-J.

(2024) Commun Biol 7: 1658-1658

Released	2025-01-22
Method	ELECTRON MICROSCOPY 2.65 Å
Organisms	Roseospirillum parvum
Macromolecule	Unique protein chains: 6
Unique Ligands	8K6, BCL, BPH, CRT, FE, HEC, LMT, MG, MQ8, PGV

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9AUV	Download File View File

Crystal structure of A. baumannii GuaB dCBS with inhibitor GNE9123

Harris, S.F., Wu, P.

(2024) mBio 15: e0089724-e0089724

Released	2025-01-15
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Acinetobacter baumannii
Macromolecule	Inosine-5'-monophosphate dehydrogenase (protein)
Unique Ligands	IMP, VOA

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9AUW	Download File View File

Crystal structure of A. baumannii GuaB dCBS with inhibitor GNE9979

Harris, S.F., Wu, P.

(2024) mBio 15: e0089724-e0089724

Released	2025-01-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Acinetobacter baumannii
Macromolecule	Inosine-5'-monophosphate dehydrogenase (protein)
Unique Ligands	IMP, VP4

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9AUX	Download File View File

Crystal structure of A. baumannii GuaB dCBS with inhibitor GNE2011

Harris, S.F., Wu, P.

(2024) mBio 15: e0089724-e0089724

Released	2025-01-15
Method	X-RAY DIFFRACTION 2.46 Å
Organisms	Acinetobacter baumannii
Macromolecule	Inosine-5'-monophosphate dehydrogenase (protein)
Unique Ligands	A1AG0, IMP

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9AUY	Download File View File

Crystal structure of S. aureus GuaB dCBS with inhibitor GNE9123

Harris, S.F., Wu, P.

(2024) mBio 15: e0089724-e0089724

Released	2025-01-15
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Staphylococcus aureus
Macromolecule	Inosine-5'-monophosphate dehydrogenase (protein)
Unique Ligands	IMP, VOA

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9AUZ	Download File View File

Crystal structure of S. aureus GuaB dCBS with inhibitor GNE9979

Harris, S.F., Wu, P.

(2024) mBio 15: e0089724-e0089724

Released	2025-01-15
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Staphylococcus aureus
Macromolecule	Inosine-5'-monophosphate dehydrogenase (protein)
Unique Ligands	IMP, VP4

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9AV0	Download File View File

Crystal structure of S. aureus GuaB dCBS with inhibitor GNE2011

Harris, S.F., Wu, P.

(2024) mBio 15: e0089724-e0089724

Released	2024-11-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus aureus
Macromolecule	Inosine-5'-monophosphate dehydrogenase (protein)
Unique Ligands	A1AG0, IMP

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9AV1	Download File View File

Crystal structure of E. coli GuaB dCBS with inhibitor GNE9123

Harris, S.F., Wu, P.

(2024) mBio 15: e0089724-e0089724

Released	2025-01-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	Inosine-5'-monophosphate dehydrogenase (protein)
Unique Ligands	IMP, VOA

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9AV2	Download File View File

Crystal structure of E. coli GuaB dCBS with inhibitor GNE9979

Harris, S.F., Wu, P.

(2024) mBio 15: e0089724-e0089724

Released	2025-01-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	Inosine-5'-monophosphate dehydrogenase (protein)
Unique Ligands	IMP, VP4

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9AV3	Download File View File

Crystal structure of E. coli GuaB dCBS with inhibitor GNE2011

Harris, S.F., Wu, P.

(2024) mBio 15: e0089724-e0089724

Released	2025-01-15
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Escherichia coli
Macromolecule	Inosine-5'-monophosphate dehydrogenase (protein)
Unique Ligands	A1AG0, IMP

1 to 25 of 27 Structures

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