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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Pavelich, I.J."

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Search Summary

This query matches 23 Structures.

Refinements

Structure Determination Methodology

experimental (23)

Scientific Name of Source Organism

	Thermus thermophilus HB8 (17)
	Escherichia coli (15)
	synthetic construct (8)
	Escherichia coli K-12 (3)
	Escherichia coli JJ1887 (2)
	Proteus vulgaris (2)
	Streptomyces alboniger (2)
	Bordetella pertussis (1)
	Escherichia coli O139:H28 str. E24377A (1)
	Escherichia coli S88 (1)

More...

Taxonomy

	Bacteria (23)
	other sequences (8)

Experimental Method

	X-RAY DIFFRACTION (22)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (23)
	RNA (18)
	DNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (1)
	2.5 - 3.0 (2)
	3.0 - 3.5 (11)
	3.5 - 4.0 (8)

Release Date

	2015 - 2019 (20)
	2020 - 2024 (3)

Enzyme Classification Name

	Hydrolases (5)
	Transferases (2)

Symmetry Type

	Asymmetric (19)
	Cyclic (4)

SCOP Classification

All alpha proteins (1)

AllSelected

1 to 23 of 23 Structures

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5CZP	Download File View File

70S termination complex containing E. coli RF2

Hoffer, E.D., Dunham, C.M.

(2016) Cell Rep 17: 11-18

Released	2016-10-12
Method	X-RAY DIFFRACTION 3.2999592266 Å
Organisms	Escherichia coli K-12 Escherichia coli str. K-12 substr. MG1655 Thermus thermophilus HB8
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 5
Unique Ligands	MG, SF4, ZN

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5DFE	Download File View File

70S termination complex containing E. coli RF2

Hoffer, E.D., Dunham, C.M.

(2016) Cell Rep 17: 11-18

Released	2016-10-12
Method	X-RAY DIFFRACTION 3.09997551079 Å
Organisms	Escherichia coli Escherichia coli K-12 Thermus thermophilus HB8 synthetic construct
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 5
Unique Ligands	MG, SF4, ZN

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5J30	Download File View File

Thermus thermophilus 70S termination complex containing E. coli RF1

Hoffer, E.D., Dunham, C.M.

(2016) Cell Rep 17: 11-18

Released	2016-10-12
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli JJ1887 Escherichia coli S88 Thermus thermophilus HB8 synthetic construct
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 5
Unique Ligands	MG, SF4, ZN

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5J3C	Download File View File

Thermus thermophilus 70S termination complex containing E. coli RF1

Hoffer, E.D., Dunham, C.M.

(2016) Cell Rep 17: 11-18

Released	2016-10-12
Method	X-RAY DIFFRACTION 3.04 Å
Organisms	Escherichia coli JJ1887 Escherichia coli O139:H28 str. E24377A Thermus thermophilus HB8 synthetic construct
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 5
Unique Ligands	MG, SF4, ZN

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5UCT	Download File View File

Mycobacterium tuberculosis toxin MazF-mt6

Hoffer, E.H., Dunham, C.M.

(2017) J Biol Chem 292: 7718-7726

Released	2017-03-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Endoribonuclease MazF3 (protein)
Unique Ligands	SO4

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5VPO	Download File View File

The 70S P-site ASL SufA6 complex

Hong, S., Sunita, S., Dunkle, J.A., Maehigashi, T., Dunham, C.M.

(2018) Proc Natl Acad Sci U S A 115: 11226-11231

Released	2018-09-26
Method	X-RAY DIFFRACTION 3.34 Å
Organisms	Escherichia coli Escherichia coli K-12 Thermus thermophilus HB8
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 5
Unique Ligands	MG, ZN

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5VPP	Download File View File

The 70S P-site tRNA SufA6 complex

Hong, S., Sunita, S., Dunkle, J.A., Maehigashi, T., Dunham, C.M.

(2018) Proc Natl Acad Sci U S A 115: 11226-11231

Released	2018-09-26
Method	X-RAY DIFFRACTION 3.9 Å
Organisms	Escherichia coli Thermus thermophilus HB8 synthetic construct
Macromolecule	Unique protein chains: 48 Unique nucleic acid chains: 5
Unique Ligands	MG, ZN

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6BUW	Download File View File

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Hoffer, E.D., Maehigashi, T., Fagan, C.E., Dunham, C.M.

(2019) Nucleic Acids Res 47: 1557-1563

Released	2018-11-14
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Escherichia coli Thermus thermophilus HB8
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 5
Unique Ligands	MG, SF4, ZN

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6BZ6	Download File View File

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Hoffer, E.D., Maehigashi, T., Fagan, C.E., Dunham, C.M.

(2019) Nucleic Acids Res 47: 1557-1563

Released	2018-11-14
Method	X-RAY DIFFRACTION 3.18 Å
Organisms	Escherichia coli Thermus thermophilus HB8
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 5
Unique Ligands	MG, SF4, ZN

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6BZ7	Download File View File

Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site.

Hoffer, E.D., Maehigashi, T., Fagan, C.E., Dunham, C.M.

(2019) Nucleic Acids Res 47: 1557-1563

Released	2018-11-14
Method	X-RAY DIFFRACTION 3.68 Å
Organisms	Escherichia coli Thermus thermophilus HB8
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	MG, SF4, ZN

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6BZ8	Download File View File

Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site

Hoffer, E.D., Maehigashi, T., Fagan, C.E., Dunham, C.M.

(2019) Nucleic Acids Res 47: 1557-1563

Released	2018-11-14
Method	X-RAY DIFFRACTION 3.74 Å
Organisms	Escherichia coli Thermus thermophilus HB8
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	MG, SF4, ZN

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6CF1	Download File View File

Proteus vulgaris HigA antitoxin structure

Schureck, M.A., Hoffer, E.D., Ei Cho, S., Dunham, C.M.

(2019) Mol Microbiol 111: 1449-1462

Released	2019-02-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Proteus vulgaris
Macromolecule	Antitoxin HigA (protein)
Unique Ligands	K

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6CHV	Download File View File

Proteus vulgaris HigA antitoxin bound to DNA

Schureck, M.A., Hoffer, E.D., Onuoha, N., Dunham, C.M.

(2019) Mol Microbiol 111: 1449-1462

Released	2019-02-27
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Proteus vulgaris
Macromolecule	Antitoxin HigA (protein) pHigCryst3 (nucleic acid) pHigCryst4 (nucleic acid)
Unique Ligands	MG

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6M9A	Download File View File

Bordetella pertussis globin coupled sensor regulatory domain (BpeGReg)

Rivera, S.R., Hoffer, E.D., Dunham, C.M., Weinert, E.E.

(2018) Inorg Chem 57: 14386-14395

Released	2018-11-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bordetella pertussis
Macromolecule	Signaling protein (protein)
Unique Ligands	CA, HEM, PEO

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6NDK	Download File View File

Structure of ASLSufA6 A37.5 bound to the 70S A site

Nguyen, H.T., Hoffer, E.D., Dunham, C.M.

(2019) J Biol Chem 294: 5281-5291

Released	2019-02-27
Method	X-RAY DIFFRACTION 3.64 Å
Organisms	Escherichia coli Salmonella enterica subsp. enterica serovar Typhimurium Thermus thermophilus HB8 synthetic construct
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 7
Unique Ligands	MG, SF4, ZN

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6NY6	Download File View File

Structure of dimeric Escherichia coli toxin YoeB bound to the Thermus thermophilus 30S ribosome

Pavelich, I.J., Hoffer, E.D., Maehigashi, T., Dunham, C.M.

(2019) Nucleic Acids Res 47: 10400-10413

Released	2019-08-21
Method	X-RAY DIFFRACTION 3.74 Å
Organisms	Escherichia coli Thermus thermophilus HB8
Macromolecule	Unique protein chains: 21 Unique nucleic acid chains: 1
Unique Ligands	MG, SF4, ZN

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6OM6	Download File View File

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Hoffer, E.D., Mehrani, A., Keiler, K.C., Stagg, S.M., Dunham, C.M.

(2021) Nat Commun 12: 1799-1799

Released	2021-02-10
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Escherichia coli
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 5
Unique Ligands	KKL

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6OTR	Download File View File

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Pavelich, I.P., Hoffer, E.D., Maehigashi, T., Dunham, C.M.

(2019) Nucleic Acids Res 47: 10400-10413

Released	2019-08-21
Method	X-RAY DIFFRACTION 3.12 Å
Organisms	Escherichia coli Thermus thermophilus HB8 synthetic construct
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 6
Unique Ligands	A3P, MG, SF4, ZN

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6OXA	Download File View File

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Pavelich, I.J., Hoffer, E.D., Maehigashi, T., Dunham, C.M.

(2019) Nucleic Acids Res 47: 10400-10413

Released	2019-08-21
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Escherichia coli Streptomyces alboniger Thermus thermophilus HB8
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 6
Unique Ligands	MG, SF4, ZN

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6OXI	Download File View File

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Pavelich, I.J., Hoffer, E.D., Maehigashi, T., Dunham, C.M.

(2019) Nucleic Acids Res 47: 10400-10413

Released	2019-08-21
Method	X-RAY DIFFRACTION 3.495 Å
Organisms	Escherichia coli Streptomyces alboniger Thermus thermophilus HB8
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 6
Unique Ligands	MG, SF4, ZN

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6PQB	Download File View File

Crystal structure of aminoglycoside-resistance methyltransferase RmtC bound to S-adenosylhomocysteine (SAH)

Nosrati, M., Hoffer, E.D., Conn, G.L.

(2019) J Biol Chem 294: 17642-17653

Released	2019-10-16
Method	X-RAY DIFFRACTION 3.14 Å
Organisms	Proteus mirabilis
Macromolecule	16S rRNA (guanine(1405)-N(7))-methyltransferase (protein)
Unique Ligands	SAH

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8FOM	Download File View File

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Nguyen, H.A., Hoffer, E.D., Maehigashi, T., Fagan, C.E., Dunham, C.M.

(2023) J Biol Chem 299: 104608-104608

Released	2023-03-29
Method	X-RAY DIFFRACTION 3.58 Å
Organisms	Escherichia coli Thermus thermophilus HB8 synthetic construct
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 7
Unique Ligands	MG, SF4, ZN

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8FON	Download File View File

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Nguyen, H.A., Hoffer, E.D., Maehigashi, T., Fagan, C.E., Dunham, C.M.

(2023) J Biol Chem 299: 104608-104608

Released	2023-03-29
Method	X-RAY DIFFRACTION 3.64 Å
Organisms	Escherichia coli Thermus thermophilus HB8 synthetic construct
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 7
Unique Ligands	MG, SF4, ZN

1 to 23 of 23 Structures

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