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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Saito, H."

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Search Summary

This query matches 32 Structures.

Refinements

Structure Determination Methodology

experimental (32)

Scientific Name of Source Organism

	Homo sapiens (23)
	Escherichia coli (6)
	Oryza sativa (4)
	Triticum aestivum (4)
	Human immunodeficiency virus 1 (2)
	Rattus norvegicus (2)
	Murine polyomavirus (strain A2) (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (29)
	Bacteria (6)
	Eukaryota (eukaryotes) (3)
	Riboviria (2)
	Monodnaviria (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (18)
	ELECTRON MICROSCOPY (14)

Polymer Entity Type

	Protein (31)
	RNA (15)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (5)
	2.0 - 2.5 (12)
	2.5 - 3.0 (11)
	3.0 - 3.5 (3)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (2)
	2010 - 2014 (6)
	2015 - 2019 (4)
	2020 - 2024 (16)
	2025 - 2029 (1)

Enzyme Classification Name

	Lyases (5)
	Hydrolases (3)
	Transferases (3)

Symmetry Type

	Asymmetric (28)
	Dihedral (1)
	Cyclic (2)

SCOP Classification

	All alpha proteins (8)
	All beta proteins (4)
	Alpha and beta proteins (a/b) (2)
	Artifacts (2)

AllSelected

1 to 25 of 32 Structures

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1LAR	Download File View File

CRYSTAL STRUCTURE OF THE TANDEM PHOSPHATASE DOMAINS OF RPTP LAR

Nam, H.-J., Poy, F., Krueger, N., Saito, H., Frederick, C.A.

(1999) Cell 97: 449-457

Released	2000-04-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (LAR) (protein)

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1MFG	Download File View File

The Structure of ERBIN PDZ domain bound to the Carboxy-terminal tail of the ErbB2 Receptor

Birrane, G., Chung, J., Ladias, J.A.

(2003) J Biol Chem 278: 1399-1402

Released	2003-01-21
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	Erb-B2 INTERACTING PROTEIN (protein) Erb-B2 carboxyl-terminal fragment (protein)

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1MFL	Download File View File

The Structure of ERBIN PDZ domain bound to the Carboxy-terminal tail of the ErbB2 Receptor

Birrane, G., Chung, J., Ladias, J.A.

(2003) J Biol Chem 278: 1399-1402

Released	2003-01-21
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	Erb-B2 INTERACTING PROTEIN (protein) PHOSPHORYLATED Erb-B2 carboxyl-terminal fragment. (protein)

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1YGR	Download File View File

Crystal structure of the tandem phosphatase domain of RPTP CD45

Nam, H.J., Poy, F., Saito, H., Frederick, C.A.

(2005) J Exp Med 201: 441-452

Released	2005-02-22
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	CD45 Protein Tyrosine Phosphatase (protein) T-cell Receptor CD3 zeta ITAM-1 (protein)

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1YGU	Download File View File

Crystal structure of the tandem phosphatase domains of RPTP CD45 with a pTyr peptide

Nam, H., Poy, F., Saito, H., Frederick, C.A.

(2005) J Exp Med 201: 441-452

Released	2005-02-22
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Murine polyomavirus (strain A2)
Macromolecule	Leukocyte common antigen (protein) Polyoma Middle T antigen (protein)

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3AUQ	Download File View File

Crystal structure of the human vitamin D receptor ligand binding domain complexed with Yne-diene type analog of active 14-epi-2alpha-methyl-19-norvitamin D3

Kakuda, S., Takimoto-Kamimura, M.

(2011) J Am Chem Soc 133: 7215-7221

Released	2011-09-14
Method	X-RAY DIFFRACTION 2.64 Å
Organisms	Homo sapiens
Macromolecule	Vitamin D3 receptor (protein)
Unique Ligands	CA9

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3AUR	Download File View File

Crystal structure of the human vitamin D receptor ligand binding domain complexed with Yne-diene type analog of active 14-epi-2beta-methyl-19-norvitamin D3

Kakuda, S., Takimoto-Kamimura, M.

(2011) J Am Chem Soc 133: 7215-7221

Released	2011-09-14
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Homo sapiens
Macromolecule	Vitamin D3 receptor (protein)
Unique Ligands	CA9

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3AX8	Download File View File

Crystal structure of the human vitamin D receptor ligand binding domain complexed with 15alpha-methoxy-1alpha,25-dihydroxyvitamin D3

Kakuda, S., Takimoto-Kamimura, M.

(2011) Org Lett 13: 2852-2855

Released	2011-10-05
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Vitamin D3 receptor (protein)
Unique Ligands	EIM

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3VHW	Download File View File

Crystal structure of the human vitamin D receptor ligand binding domain complexed with 4-MP

Kakuda, S., Takimoto-Kamimura, M.

(2013) J Steroid Biochem Mol Biol 136: 3-8

Released	2013-03-06
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Homo sapiens
Macromolecule	Vitamin D3 receptor (protein)
Unique Ligands	VHW

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3X31	Download File View File

Crystal structure of the human vitamin D receptor ligand binding domain complexed with 7,8-cis-14-epi-1a,25-Dihydroxy-19-norvitamin D3

Kakuda, S., Takimoto-Kamimura, M.

To be published

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Homo sapiens
Macromolecule	Vitamin D3 receptor (protein)
Unique Ligands	41V

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3X36	Download File View File

Crystal structure of the human vitamin D receptor ligand binding domain complexed with 7,8-cis-1a,25-Dihydroxy-19-norvitamin D3

Takimoto-Kamimura, M., Kakuda, S.

To be published

Released	2016-01-20
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Homo sapiens
Macromolecule	Vitamin D3 receptor (protein)
Unique Ligands	41W

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4ITE	Download File View File

Crystal structure of the human vitamin D receptor ligand binding domain complexed with 1alpha,25-Dihydroxy-2alpha-[2-(2H-tetrazol-2-yl)ethyl]vitamin D3

Kakuda, S., Takimoto-Kamimura, M.

(2013) ACS Med Chem Lett 4: 671-674

Released	2014-01-22
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Homo sapiens
Macromolecule	Vitamin D3 receptor (protein)
Unique Ligands	TEY

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4ITF	Download File View File

Crystal structure of the human vitamin D receptor ligand binding domain complexed with 1alpha,25-Dihydroxy-2alpha-[2-(1H-tetrazole-1-yl)ethyl]vitamin D3

Kakuda, S., Takimoto-Kamimura, M.

(2013) ACS Med Chem Lett 4: 671-674

Released	2014-01-22
Method	X-RAY DIFFRACTION 2.84 Å
Organisms	Homo sapiens
Macromolecule	Vitamin D3 receptor (protein)
Unique Ligands	TFY

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5TYR	Download File View File

X-ray crystal structure of wild type HIV-1 protease in complex with GRL-121

Yedidi, R.S., Hayashi, H., Aoki, M., Das, D., Ghosh, A.K., Mitsuya, H.

(2017) Elife 6:

Released	2017-10-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease (protein)
Unique Ligands	7O7

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5TYS	Download File View File

X-ray crystal structure of wild type HIV-1 protease in complex with GRL-142

Yedidi, R.S., Hayashi, H., Aoki, M., Das, D., Ghosh, A.K., Mitsuya, H.

(2017) Elife 6:

Released	2017-10-18
Method	X-RAY DIFFRACTION 2.007 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease (protein)
Unique Ligands	7OA

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6LFE	Download File View File

Rat-COMT, Nitecapone,SAM and Mg bond

Takebe, K., Iijima, H., Suzuki, M.

(2020) Chem Pharm Bull (Tokyo) 68: 447-451

Released	2020-03-04
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Rattus norvegicus
Macromolecule	Catechol O-methyltransferase (protein)
Unique Ligands	EAO, IPA, MG, PEG, SAM

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7Y7C	Download File View File

Structure of the Bacterial Ribosome with human tRNA Asp(G34) and mRNA(GAU)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-10-25
Method	ELECTRON MICROSCOPY 2.51 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	MG

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7Y7D	Download File View File

Structure of the Bacterial Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-10-25
Method	ELECTRON MICROSCOPY 2.58 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	MG

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7Y7E	Download File View File

Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-10-25
Method	ELECTRON MICROSCOPY 2.41 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	MAN, MG

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7Y7F	Download File View File

Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-10-25
Method	ELECTRON MICROSCOPY 2.43 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	MAN, MG

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7Y7G	Download File View File

Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-10-25
Method	ELECTRON MICROSCOPY 2.34 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	GAL, MG

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7Y7H	Download File View File

Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAC)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-10-25
Method	ELECTRON MICROSCOPY 2.51 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	GAL, MG

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8IP8	Download File View File

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Yokoyama, T., Tanaka, M., Saito, H., Nishimoto, M., Tsuda, K., Sotta, N., Shigematsu, H., Shirouzu, M., Iwasaki, S., Ito, T., Fujiwara, T.

(2024) Nat Chem Biol 20: 605-614

Released	2024-02-21
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Oryza sativa Triticum aestivum
Macromolecule	Unique protein chains: 74 Unique nucleic acid chains: 7
Unique Ligands	MG, ZN

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8IP9	Download File View File

Wheat 40S ribosome in complex with a tRNAi

Yokoyama, T., Tanaka, M., Saito, H., Nishimoto, M., Tsuda, K., Sotta, N., Shigematsu, H., Shirouzu, M., Iwasaki, S., Ito, T., Fujiwara, T.

(2024) Nat Chem Biol 20: 605-614

Released	2024-02-21
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Oryza sativa Triticum aestivum
Macromolecule	Unique protein chains: 32 Unique nucleic acid chains: 3
Unique Ligands	MG, ZN

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8IPA	Download File View File

Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide

Yokoyama, T., Tanaka, M., Saito, H., Nishimoto, M., Tsuda, K., Sotta, N., Shigematsu, H., Shirouzu, M., Iwasaki, S., Ito, T., Fujiwara, T.

(2024) Nat Chem Biol 20: 605-614

Released	2024-02-21
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Oryza sativa Triticum aestivum
Macromolecule	Unique protein chains: 74 Unique nucleic acid chains: 6
Unique Ligands	3HE, MG, ZN

1 to 25 of 32 Structures

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