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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Sakai, R."

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Search Summary

This query matches 28 Structures.

Refinements

Structure Determination Methodology

experimental (28)

Scientific Name of Source Organism

	Homo sapiens (11)
	Corticium sp. (in: basidiomycete fungi) (5)
	Cinachyrella (3)
	Momordica charantia (3)
	Rattus norvegicus (3)
	Sclerophytum lochmodes (3)

Taxonomy

Eukaryota (28)

Experimental Method

X-RAY DIFFRACTION (28)

Polymer Entity Type

Protein (28)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (14)
	2.0 - 2.5 (5)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (2)
	2005 - 2009 (5)
	2010 - 2014 (12)
	2015 - 2019 (3)
	2020 - 2024 (5)

Enzyme Classification Name

	Hydrolases (3)
	Lyases (3)

Symmetry Type

	Asymmetric (17)
	Cyclic (13)
	Dihedral (6)

SCOP Classification

	Alpha and beta proteins (a/b) (13)
	Artifacts (5)
	Alpha and beta proteins (a+b) (3)

AllSelected

1 to 25 of 28 Structures

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1BK7	Download File View File

RIBONUCLEASE MC1 FROM THE SEEDS OF BITTER GOURD

Nakagawa, A., Tanaka, I.

(1999) Biochim Biophys Acta 1433: 253-260

Released	1999-07-23
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Momordica charantia
Macromolecule	PROTEIN (RIBONUCLEASE MC1) (protein)

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1J1F	Download File View File

Crystal structure of the RNase MC1 mutant N71T in complex with 5'-GMP

Numata, T., Suzuki, A., Kakuta, Y., Kimura, K., Yao, M., Tanaka, I., Yoshida, Y., Ueda, T., Kimura, M.

(2003) Biochemistry 42: 5270-5278

Released	2003-05-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Momordica charantia
Macromolecule	RIBONUCLEASE MC1 (protein)
Unique Ligands	5GP

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1J1G	Download File View File

Crystal structure of the RNase MC1 mutant N71S in complex with 5'-GMP

Numata, T., Suzuki, A., Kakuta, Y., Kimura, K., Yao, M., Tanaka, I., Yoshida, Y., Ueda, T., Kimura, M.

(2003) Biochemistry 42: 5270-5278

Released	2003-05-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Momordica charantia
Macromolecule	Ribonuclease MC1 (protein)
Unique Ligands	5GP

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2ZNS	Download File View File

Crystal structure of the ligand-binding core of the human ionotropic glutamate receptor, GluR5, in complex with glutamate

Unno, M., Sasaki, M., Ikeda-Saito, M.

(2011) J Mol Biology 413: 667-683

Released	2009-05-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Glutamate receptor, ionotropic kainate 1 (protein)
Unique Ligands	GLU

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2ZNT	Download File View File

Crystal structure of the ligand-binding core of the human ionotropic glutamate receptor, GluR5, in complex with a novel selective agonist, dysiherbaine

Unno, M., Sasaki, M., Ikeda-Saito, M.

(2011) J Mol Biology 413: 667-683

Released	2009-05-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Glutamate receptor, ionotropic kainate 1 (protein)
Unique Ligands	BME, DYH

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2ZNU	Download File View File

Crystal structure of the ligand-binding core of the human ionotropic glutamate receptor, GluR5, in complex with a novel selective agonist, neodysiherbaine A

Unno, M., Sasaki, M., Ikeda-Saito, M.

(2011) J Mol Biology 413: 667-683

Released	2009-05-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Glutamate receptor, ionotropic kainate 1 (protein)
Unique Ligands	BME, NDZ

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3FUZ	Download File View File

Crystal structure of the human glutamate receptor, GluR5, ligand-binding core in complex with L-glutamate in space group P1

Unno, M., Sasaki, M., Ikeda-Saito, M.

(2011) J Mol Biology 413: 667-683

Released	2010-01-19
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Glutamate receptor, ionotropic kainate 1 (protein)
Unique Ligands	GLU, SO4

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3FV1	Download File View File

Crystal Structure of the human glutamate receptor, GluR5, ligand-binding core in complex with dysiherbaine in space group P1

Unno, M., Sasaki, M., Ikeda-Saito, M.

(2011) J Mol Biology 413: 667-683

Released	2010-01-19
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Glutamate receptor, ionotropic kainate 1 (protein)
Unique Ligands	DYH, GOL, SO4

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3FV2	Download File View File

Crystal structure of the human glutamate receptor, GluR5, ligand-binding core in complex with neodysiherbaine A in space group P1

Unno, M., Sasaki, M., Ikeda-Saito, M.

(2011) J Mol Biology 413: 667-683

Released	2010-01-19
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Glutamate receptor, ionotropic kainate 1 (protein)
Unique Ligands	GOL, NDZ, SO4

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3FVG	Download File View File

Crystal structure of the human glutamate receptor, GluR5, ligand-binding core in complex with MSVIII-19 in space group P1

Unno, M., Sasaki, M., Ikeda-Saito, M.

(2011) J Mol Biology 413: 667-683

Released	2010-01-19
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Glutamate receptor, ionotropic kainate 1 (protein)
Unique Ligands	GOL, MS8, SO4

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3FVK	Download File View File

Crystal structure of the human glutamate receptor, GluR5, ligand-binding core in complex with 8-deoxy-neodysiherbaine A in space group P1

Unno, M., Sasaki, M., Ikeda-Saito, M.

(2011) J Mol Biology 413: 667-683

Released	2010-01-19
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Glutamate receptor, ionotropic kainate 1 (protein)
Unique Ligands	8DX, GOL, SO4

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3FVN	Download File View File

Crystal structure of the human glutamate receptor, GluR5, ligand-binding core in complex with 9-deoxy-neodysiherbaine A in space group P1

Unno, M., Sasaki, M., Ikeda-Saito, M.

(2011) J Mol Biology 413: 667-683

Released	2010-01-19
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Glutamate receptor, ionotropic kainate 1 (protein)
Unique Ligands	9DX, GOL, SO4

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3FVO	Download File View File

Crystal structure of the human glutamate receptor, GluR5, ligand-binding core in complex with 8-epi-neodysiherbaine A in space group P1

Unno, M., Sasaki, M., Ikeda-Saito, M.

To be published

Released	2010-01-19
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Glutamate receptor, ionotropic kainate 1 (protein)
Unique Ligands	8EP, GOL, SO4

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3GBA	Download File View File

X-ray structure of iGluR5 ligand-binding core (S1S2) in complex with dysiherbaine at 1.35A resolution

Frydenvang, K., Naur, P., Gajhede, M., Kastrup, J.S.

(2009) J Biological Chem 284: 14219-14229

Released	2009-03-17
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor, ionotropic kainate 1 (protein)
Unique Ligands	CL, DYH, GOL, SO4

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3GBB	Download File View File

X-ray structure of iGluR5 ligand-binding core (S1S2) in complex with MSVIII-19 at 2.10A resolution

Frydenvang, K., Naur, P., Gajhede, M., Kastrup, J.S.

(2009) J Biological Chem 284: 14219-14229

Released	2009-03-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor, ionotropic kainate 1 (protein)
Unique Ligands	MS8

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3QXM	Download File View File

Crystal Structure of Human GluK2 Ligand-Binding Core in Complex with Novel Marine-Derived Toxins, Neodysiherbaine A

Unno, M., Sasaki, M., Ikeda-Saito, M.

(2011) J Mol Biology 413: 667-683

Released	2011-10-26
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Glutamate receptor ionotropic, kainate 2 (protein)
Unique Ligands	NDZ

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3WMP	Download File View File

Crystal structure of SLL-2

Kita, A., Jimbo, M., Sakai, R., Morimoto, Y., Miki, K.

(2015) Glycobiology 25: 1016-1023

Released	2015-01-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sclerophytum lochmodes
Macromolecule	Galactose-binding lectin (protein)
Unique Ligands	A2G, CL, GLA, MPD, NA
Unique branched monosaccharides	NAG

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3WMQ	Download File View File

Crystal structure of the complex between SLL-2 and GalNAc.

Kita, A., Jimbo, M., Sakai, R., Morimoto, Y., Miki, K.

(2015) Glycobiology 25: 1016-1023

Released	2015-01-14
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Sclerophytum lochmodes
Macromolecule	Galactose-binding lectin (protein)
Unique Ligands	A2G, CL, MPD, NA
Unique branched monosaccharides	NAG

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4AGG	Download File View File

Structure of a tetrameric galectin from Cinachyrella sp. (Ball sponge)

Freymann, D.M., Focia, P.J., Sakai, R., Swanson, G.T.

(2012) Acta Crystallogr D Biol Crystallogr 68: 1163

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.98 Å
Organisms	Cinachyrella
Macromolecule	GALECTIN (protein)
Unique Ligands	CL

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4AGR	Download File View File

Structure of a tetrameric galectin from Cinachyrella sp. (Ball sponge)

Freymann, D.M., Focia, P.J., Sakai, R., Swanson, G.T.

(2012) Acta Crystallogr D Biol Crystallogr 68: 1163

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Cinachyrella
Macromolecule	GALECTIN (protein)
Unique Ligands	CL

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4AGV	Download File View File

Structure of a tetrameric galectin from Cinachyrella sp. (Ball sponge)

Freymann, D.M., Focia, P.J., Sakai, R., Swanson, G.T.

(2012) Acta Crystallogr D Biol Crystallogr 68: 1163

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Cinachyrella
Macromolecule	GALECTIN (protein)

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4ISU	Download File View File

Crystal structure of the GluA2 ligand-binding domain (S1S2J) in complex with the antagonist (2R)-IKM-159 at 2.3A resolution.

Juknaite, L., Frydenvang, K., Kastrup, J.S.

(2013) J Med Chem 56: 2283-2293

Released	2013-03-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor 2 (protein)
Unique Ligands	CL, IKM, SO4

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5X4A	Download File View File

SLL-2-Forssman antigen tetrasaccharides complex

Kita, A., Miki, K.

(2017) Glycobiology

Released	2017-09-20
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Sclerophytum lochmodes
Macromolecule	Galactose-binding lectin (protein)
Unique Ligands	GLA
Unique branched monosaccharides	A2G, GAL, GLA, NAG, NGA

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7F91	Download File View File

SeMet derivative of Thrombocorticin

Kageyama, H., Onodera, K., Sakai, R., Tanaka, Y.

(2022) Nat Commun 13: 7262-7262

Released	2022-07-06
Method	X-RAY DIFFRACTION 1.401 Å
Organisms	Corticium sp. (in: basidiomycete fungi)
Macromolecule	Thrombocorticin (protein)

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7F9F	Download File View File

Thrombocorticin

Kageyama, H., Onodera, K., Sakai, R., Tanaka, Y., Freymann, D.M.

(2022) Nat Commun 13: 7262-7262

Released	2022-07-06
Method	X-RAY DIFFRACTION 1.411 Å
Organisms	Corticium sp. (in: basidiomycete fungi)
Macromolecule	Thrombocorticin (protein)
Unique Ligands	MG

1 to 25 of 28 Structures

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