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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = 58A

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Escherichia coli K-12 (15)
	synthetic construct (15)

Taxonomy

	Bacteria (15)
	other sequences (15)

Experimental Method

X-RAY DIFFRACTION (15)

Polymer Entity Type

Protein (15)

Refinement Resolution (Å)

	2.0 - 2.5 (2)
	2.5 - 3.0 (11)
	3.0 - 3.5 (2)

Release Date

2020 - 2024 (15)

Membrane Protein Annotation

	MemProtMD (15)
	PDBTM (15)
	mpstruc (11)
	OPM (3)

Symmetry Type

	Asymmetric (14)
	Cyclic (1)

AllSelected

1 to 15 of 15 Structures

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6ZO5	Download File View File

Fusidic acid binding to the TM1/TM2 groove of AcrB-G619P_G621P

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	C14, D10, D12, DDR, EDO, FUA, GOL, HEX, LMT, LPX, OCT, PGE, PTY, SO4, XPE

Explore in 3D

6ZO6	Download File View File

Minocycline binding to the deep binding pocket of AcrB-G619P

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	1PE, 8K6, C14, CL, D10, D12, DDQ, DDR, EDO, GOL, HEX, LMT, LPX, MIY, MYS, OCT, PG4, PGE, PTY, R16, SO4

Explore in 3D

6ZO7	Download File View File

3-Formylrifamycin SV binding to the access pocket of AcrB-G619P L and T protomer

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	3YI, CL, D10, D12, DDQ, EDO, GOL, HEX, LMT, NA, PTY, R16, SO4

Explore in 3D

6ZO8	Download File View File

Minocycline binding to the deep binding pocket of AcrB-G621P

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	C14, CL, D10, D12, DDQ, DDR, EDO, GOL, HEX, LMT, LMU, LPX, MIY, NA, OCT, PTY, SO4

Explore in 3D

6ZO9	Download File View File

Binding of two rifabutins to the access pocket of AcrB-G621P T protomer

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	C14, CL, D10, D12, DDR, EDO, GOL, HEX, LMT, OCT, PTY, RBT, SO4

Explore in 3D

6ZOA	Download File View File

Partially induced AcrB T protomer and DDM binding to the TM8/PC2 pathway of AcrB L2 protomer

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	C14, CL, D10, D12, DDQ, EDO, GOL, HEX, LMT, LNK, OCT, PTY

Explore in 3D

6ZOB	Download File View File

3-Formylrifamycin SV binding to the access pocket of AcrB L protomer

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	3YI, CL, D10, DDQ, DDR, EDO, ETE, GOL, HEX, LMT, OCT

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6ZOC	Download File View File

Erythromycin binding to the access pocket of AcrB-G616P L protomer and 3-formylrifamycin SV binding to the access pocket of AcrB-G616P T protomer

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	3YI, C14, D12, DDQ, EDO, ERY, GOL, HEX, LMT, OCT, PG4, PTY, SO4

Explore in 3D

6ZOE	Download File View File

AcrB-F563A symmetric T protomer

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	D10, EDO, LMT, PGE

Explore in 3D

6ZOF	Download File View File

Fusidic acid binding to the TM7/TM8 groove of AcrB-F380A T protomer

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	D10, DDQ, FUA, GOL, LMT, PTY, R16, SO4

Explore in 3D

6ZOG	Download File View File

Minocycline binding to the deep binding pocket of AcrB-I38F_I671T

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	8K6, C14, D10, D12, DDQ, DDR, EDO, GOL, LMT, MIY, MYS, OCT, PTY, SO4

Explore in 3D

6ZOH	Download File View File

3-Formylrifamycin SV binding to the access pocket of AcrB-G619P_G621P L and T protomers

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	3YI, D10, D12, DDQ, DDR, EDO, GOL, HEX, LMT, LPX, PTY

Explore in 3D

7OUK	Download File View File

BDM88855 inhibitor bound to the transmembrane domain of AcrB

Tam, H.K., Foong, W.E., Pos, K.M.

(2022) Nat Commun 13: 115-115

Released	2021-12-29
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	1K8, C14, D10, DDQ, DDR, EDO, GOL, LMT, LPX, OCT, SO4

Explore in 3D

7OUL	Download File View File

BDM88832 inhibitor bound to the transmembrane domain of AcrB-R971A

Tam, H.K., Foong, W.E., Pos, K.M.

(2022) Nat Commun 13: 115-115

Released	2021-12-29
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	1KE, C14, D12, DDQ, EDO, GOL, LMT, LPX, SO4

Explore in 3D

7OUM	Download File View File

BDM88855 inhibitor bound to the transmembrane domain of AcrB-R971A

Tam, H.K., Foong, W.E., Pos, K.M.

(2022) Nat Commun 13: 115-115

Released	2021-12-29
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	1K8, C14, D10, DDQ, EDO, GOL, LMT, LPX, OCT, SO4

1 to 15 of 15 Structures

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