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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = CD4

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Gemmatimonas phototrophica (4)
	Cereibacter sphaeroides 2.4.1 (2)
	Mus musculus (1)
	Mycobacterium tuberculosis H37Rv (1)
	Rhodospirillum rubrum ATCC 11170 (1)

Taxonomy

	Bacteria (8)
	Eukaryota (1)

Experimental Method

	ELECTRON MICROSCOPY (8)
	X-RAY DIFFRACTION (1)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	2.0 - 2.5 (4)
	2.5 - 3.0 (5)

Release Date

	2010 - 2014 (1)
	2020 - 2024 (7)
	2025 - 2029 (1)

Membrane Protein Annotation

	OPM (7)
	mpstruc (2)
	PDBTM (2)

Symmetry Type

	Asymmetric (8)
	Cyclic (1)

SCOP Classification

	All beta proteins (1)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 9 of 9 Structures

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3MA7	Download File View File

Crystal structure of Cardiolipin bound to mouse CD1D

Zajonc, D.M.

(2011) J Immunol 186: 4771-4781

Released	2011-03-16
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Mus musculus
Macromolecule	Beta-2 microglobulin (protein) T-cell surface glycoprotein CD1d1 (protein)
Unique Ligands	CD4, NAG, PLM
Unique branched monosaccharides	NAG

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7O0U	Download File View File

Cryo-EM structure (model_1a) of the RC-dLH complex from Gemmatimonas phototrophica at 2.4 A

Qian, P., Koblizek, M.

(2022) Sci Adv 8: eabk3139-eabk3139

Released	2022-03-02
Method	ELECTRON MICROSCOPY 2.35 Å
Organisms	Gemmatimonas phototrophica
Macromolecule	Unique protein chains: 9
Unique Ligands	0V9, BCL, BPH, CD4, CRT, FE, HEC, LMT, MQ8, NDG, PGW, UYH, V75, V7B, V7N
Unique branched monosaccharides	MAN, RAM

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7O0V	Download File View File

Cryo-EM structure (model_2a) of the RC-dLH complex from Gemmatimonas phototrophica at 2.5 A

Qian, P., Koblizek, M.

(2022) Sci Adv 8: eabk3139-eabk3139

Released	2022-03-02
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Gemmatimonas phototrophica
Macromolecule	Unique protein chains: 12
Unique Ligands	0V9, BCL, BPH, CD4, CRT, FE, HEC, LMT, MQ8, NDG, PGW, UYH, V75, V7B, V7N
Unique branched monosaccharides	MAN, RAM

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7O0W	Download File View File

Cryo-EM structure of the RC-dLH complex (model_1b) from Gemmatimonas phototrophica at 2.47 A

Qian, P., Koblizek, M.

(2022) Sci Adv 8: eabk3139-eabk3139

Released	2022-03-02
Method	ELECTRON MICROSCOPY 2.47 Å
Organisms	Gemmatimonas phototrophica
Macromolecule	Unique protein chains: 11
Unique Ligands	0V9, BCL, BPH, CD4, CRT, FE, HEC, LMT, MQ8, NDG, PGW, UYH, V75, V7B, V7N
Unique branched monosaccharides	MAN, RAM

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7O0X	Download File View File

Cryo-EM structure (model_2b) of the RC-dLH complex from Gemmatimonas phototrophica at 2.44 A

Qian, P., Koblizek, M.

(2022) Sci Adv 8: eabk3139-eabk3139

Released	2022-03-02
Method	ELECTRON MICROSCOPY 2.44 Å
Organisms	Gemmatimonas phototrophica
Macromolecule	Unique protein chains: 11
Unique Ligands	0V9, BCL, BPH, CD4, CRT, FE, HEC, LMT, MQ8, NDG, PGW, UYH, V75, V7B, V7N
Unique branched monosaccharides	MAN, RAM

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7OY8	Download File View File

Cryo-EM structure of the Rhodospirillum rubrum RC-LH1 complex

Qian, P., Croll, T.I., Castro, H.P., Moriarty, N.W., sader, K., Hunter, C.N.

(2021) Biochem J 478: 3253-3263

Released	2021-09-22
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Rhodospirillum rubrum ATCC 11170
Macromolecule	Unique protein chains: 6
Unique Ligands	07D, BPH, CD4, CL, CRT, FE, LMT, PGW, PO4, RQ0, U10

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7PIL	Download File View File

Cryo-EM structure of the Rhodobacter sphaeroides RC-LH1-PufXY monomer complex at 2.5 A

Qian, P., Hunter, C.N.

(2021) Biochem J 478: 3775-3790

Released	2021-10-13
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Cereibacter sphaeroides 2.4.1
Macromolecule	Unique protein chains: 7
Unique Ligands	3PE, BCL, BPH, CD4, FE, LMT, SPO, U10, UQ1

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7PQD	Download File View File

Cryo-EM structure of the dimeric Rhodobacter sphaeroides RC-LH1 core complex at 2.9 A: the structural basis for dimerisation

Qian, P., Hunter, C.N.

(2021) Biochem J 478: 3923-3937

Released	2021-11-24
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Cereibacter sphaeroides 2.4.1
Macromolecule	Unique protein chains: 8
Unique Ligands	3PE, BCL, BPH, CD4, FE, LMT, SP2, SQD, U10, UQ1

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9FKA	Download File View File

Cryo-EM structure of the reduced cytochrome bd oxidase from M. tuberculosis

Kayastha, K., Bruenle, S.

(2024) J Biol Chem 301: 108094-108094

Released	2025-02-12
Method	ELECTRON MICROSCOPY 2.96 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Probable integral membrane cytochrome D ubiquinol oxidase (Subunit I) CydA (Cytochrome BD-I oxidase subunit I) (protein) Probable integral membrane cytochrome D ubiquinol oxidase (Subunit II) CydB (Cytochrome BD-I oxidase subunit II) (protein)
Unique Ligands	CD4, CDL, HDD, HEM, MQ9, PTY

1 to 9 of 9 Structures

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Structure Determination Methodology

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