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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = OCD

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Search Summary

This query matches 4 Structures.

Refinements

Structure Determination Methodology

experimental (4)

Scientific Name of Source Organism

	Synechococcus elongatus PCC 7942 = FACHB-805 (2)
	Dunaliella salina (1)
	Limnothrix sp. KNUA012 (1)

Taxonomy

	Bacteria (3)
	Eukaryota (1)

Experimental Method

	X-RAY DIFFRACTION (3)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (4)

Refinement Resolution (Å)

	2.0 - 2.5 (3)
	2.5 - 3.0 (1)

Release Date

	2015 - 2019 (1)
	2020 - 2024 (3)

Enzyme Classification Name

	Oxidoreductases (3)
	Lyases (3)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)

Symmetry Type

Asymmetric (4)

SCOP Classification

	Membrane and cell surface proteins and peptides (1)
	All alpha proteins (3)
	Artifacts (1)
	Alpha and beta proteins (a+b) (1)
	All beta proteins (1)

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5K52	Download File View File

Crystal structures of aldehyde deformylating oxygenase from Limnothrix sp. KNUA012

Park, A.K., Kim, H-.W.

(2016) Biochem Biophys Res Commun 477: 395-400

Released	2017-03-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Limnothrix sp. KNUA012
Macromolecule	Aldehyde decarbonylase (protein)
Unique Ligands	OCD

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6JZU	Download File View File

The crystal structure of acyl-acyl carrier protein (acyl-ACP) reductase (AAR) in complex with aldehyde deformylating oxygenase (ADO)

Zhang, H.M., Li, M., Gao, Y.

(2020) Nat Commun 11: 1525-1525

Released	2020-04-01
Method	X-RAY DIFFRACTION 2.181 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	Aldehyde decarbonylase (protein) Long-chain acyl-[acyl-carrier-protein] reductase (protein)
Unique Ligands	FE2, OCD, PL3

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6JZY	Download File View File

Crystal structure of AAR with NADPH and stearyl in complex with ADO binding a long chain carbohydrate

Zhang, H.M., Li, M., Gao, Y.

(2020) Nat Commun 11: 1525-1525

Released	2020-04-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	Aldehyde decarbonylase (protein) Long-chain acyl-[acyl-carrier-protein] reductase (protein)
Unique Ligands	FE2, NDP, OCD, PL3

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6SL5	Download File View File

Dunaliella Photosystem I Supercomplex

Nelson, N., Caspy, I., Malavath, T., Klaiman, D., Shkolinsky, Y.

(2020) Biochim Biophys Acta Bioenerg 1861: 148253-148253

Released	2020-06-24
Method	ELECTRON MICROSCOPY 2.84 Å
Organisms	Dunaliella salina
Macromolecule	Unique protein chains: 19
Unique Ligands	3PH, 4RF, BCR, CA, CHL, CL0, CLA, DGD, LHG, LMG, LMK, LMU, LUT, OCD, P3H, PQN, PTY, SF4, SQD, XAT

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification