RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Chemical ID(s) = PTR

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Chemical Attributes

Help

NOT

Count

Add Subquery

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 880 Structures.

Refinements

Structure Determination Methodology

experimental (880)

Scientific Name of Source Organism

	Homo sapiens (763)
	Mus musculus (37)
	synthetic construct (33)
	Rattus norvegicus (12)
	Mycobacterium tuberculosis H37Rv (9)
	Saccharomyces cerevisiae (9)
	Gallus gallus (8)
	Bos taurus (7)
	Agrobacterium fabrum str. C58 (5)
	Escherichia phage Mu (5)

More...

Taxonomy

	Eukaryota (829)
	Bacteria (47)
	Eukaryota (eukaryotes) (47)
	other sequences (33)
	Duplodnaviria (10)
	Riboviria (8)
	Monodnaviria (7)
	Archaea (2)
	Varidnaviria (2)

Experimental Method

	X-RAY DIFFRACTION (812)
	SOLUTION NMR (50)
	ELECTRON MICROSCOPY (18)

Polymer Entity Type

	Protein (880)
	DNA (59)
	RNA (4)
	NA-hybrid (1)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (36)
	1.5 - 2.0 (202)
	2.0 - 2.5 (322)
	2.5 - 3.0 (206)
	3.0 - 3.5 (55)
	3.5 - 4.0 (6)
	4.0 - 4.5 (2)

Release Date

	1990 - 1994 (6)
	1995 - 1999 (47)
	2000 - 2004 (56)
	2005 - 2009 (129)
	2010 - 2014 (183)
	2015 - 2019 (216)
	2020 - 2024 (237)
	2025 - 2029 (6)

Enzyme Classification Name

	Transferases (664)
	Hydrolases (89)
	Isomerases (43)
	Ligases (21)
	Lyases (2)

Membrane Protein Annotation

	OPM (4)
	mpstruc (1)

Symmetry Type

	Asymmetric (788)
	Cyclic (117)
	Dihedral (7)

SCOP Classification

	Alpha and beta proteins (a+b) (493)
	Artifacts (143)
	All beta proteins (54)
	All alpha proteins (24)
	Alpha and beta proteins (a/b) (17)
	Multi-domain proteins (alpha and beta) (13)
	Small proteins (1)

AllSelected

1 to 25 of 880 Structures

Page 1 of 36

Sort by

Explore in 3D

1A07	Download File View File

C-SRC (SH2 DOMAIN) COMPLEXED WITH ACE-MALONYL TYR-GLU-(N,N-DIPENTYL AMINE)

Shewchuk, L., Jordan, S.

(1997) Biochemistry 36: 6283-6293

Released	1998-04-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	ACE-MALONYL TYR-GLU-(N,N-DIPENTYL AMINE) (protein) C-SRC TYROSINE KINASE (protein)

Explore in 3D

1A1B	Download File View File

C-SRC (SH2 DOMAIN) COMPLEXED WITH ACE-PHOSPHOTYR-GLU-(N,N-DIPENTYL AMINE)

Shewchuk, L., Jordan, S.

(1997) Biochemistry 36: 6283-6293

Released	1998-04-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	ACE-PHOSPHOTYR-GLU-(N,N-DIPENTYL AMINE) (protein) C-SRC TYROSINE KINASE (protein)

Explore in 3D

1A1C	Download File View File

C-SRC (SH2 DOMAIN) COMPLEXED WITH ACE-PHOSPHOTYR-GLU-(N-ME(-(CH2)3-CYCLOPENTYL))

Shewchuk, L., Jordan, S.

(1997) Biochemistry 36: 6283-6293

Released	1998-04-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	ACE-PHOSPHOTYR-GLU-(N-ME(-(CH2)3-CYCLOPENTYL)) (protein) C-SRC TYROSINE KINASE (protein)

Explore in 3D

1A1E	Download File View File

C-SRC (SH2 DOMAIN) COMPLEXED WITH ACE-PHOSPHOTYR-GLU-(3-BUTYLPIPERIDINE)

Shewchuk, L., Jordan, S.

(1997) Biochemistry 36: 6283-6293

Released	1998-04-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	ACE-PHOSPHOTYR-GLU-(3-BUTYLPIPERIDINE) (protein) C-SRC TYROSINE KINASE (protein)

Explore in 3D

1A31	Download File View File

HUMAN RECONSTITUTED DNA TOPOISOMERASE I IN COVALENT COMPLEX WITH A 22 BASE PAIR DNA DUPLEX

Redinbo, M.R., Stewart, L., Kuhn, P., Champoux, J.J., Hol, W.G.J.

(1998) Science 279: 1504-1513

Released	1998-08-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (TOPOISOMERASE I) (protein) DNA (5'-D(APAPAPAPAPGPAPCP5IUP5IUTPGPAPAPAPAPAP5IUP5IUP5IUP5IUPT)-3') (nucleic acid) DNA (5'-D(APAPAPAPAPTP5IUP5IUP5IUP5IUPCPAPAPAPGPTPCPTPTPTPTPT)-3') (nucleic acid)

Explore in 3D

1A81	Download File View File

CRYSTAL STRUCTURE OF THE TANDEM SH2 DOMAIN OF THE SYK KINASE BOUND TO A DUALLY TYROSINE-PHOSPHORYLATED ITAM

Fuetterer, K., Waksman, G.

(1998) J Mol Biol 281: 523-537

Released	1998-10-21
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	SYK KINASE (protein) T-CELL SURFACE GLYCOPROTEIN CD3 EPSILON CHAIN (protein)

Explore in 3D

1AD5	Download File View File

SRC FAMILY KINASE HCK-AMP-PNP COMPLEX

Sicheri, F., Moarefi, I., Kuriyan, J.

(1997) Nature 385: 602-609

Released	1997-05-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	HAEMATOPOETIC CELL KINASE HCK (protein)
Unique Ligands	ANP, CA

Explore in 3D

1AOT	Download File View File

NMR STRUCTURE OF THE FYN SH2 DOMAIN COMPLEXED WITH A PHOSPHOTYROSYL PEPTIDE, MINIMIZED AVERAGE STRUCTURE

Mulhern, T.D., Shaw, G.L., Morton, C.J., Day, A.J., Campbell, I.D.

(1997) Structure 5: 1313-1323

Released	1998-01-14
Method	SOLUTION NMR
Organisms	Alphapolyomavirus mauratus Homo sapiens
Macromolecule	FYN PROTEIN-TYROSINE KINASE (protein) PHOSPHOTYROSYL PEPTIDE (protein)

Explore in 3D

1AOU	Download File View File

NMR STRUCTURE OF THE FYN SH2 DOMAIN COMPLEXED WITH A PHOSPHOTYROSYL PEPTIDE, 22 STRUCTURES

Mulhern, T.D., Shaw, G.L., Morton, C.J., Day, A.J., Campbell, I.D.

(1997) Structure 5: 1313-1323

Released	1998-01-14
Method	SOLUTION NMR
Organisms	Alphapolyomavirus mauratus Homo sapiens
Macromolecule	FYN PROTEIN-TYROSINE KINASE (protein) PHOSPHOTYROSYL PEPTIDE (protein)

Explore in 3D

1AYA	Download File View File

CRYSTAL STRUCTURES OF PEPTIDE COMPLEXES OF THE AMINO-TERMINAL SH2 DOMAIN OF THE SYP TYROSINE PHOSPHATASE

Lee, C.-H., Kuriyan, J.

(1994) Structure 2: 423-438

Released	1994-08-31
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Mus musculus
Macromolecule	PEPTIDE PDGFR-1009 (protein) PROTEIN-TYROSINE PHOSPHATASE SYP (N-TERMINAL SH2 DOMAIN) (protein)

Explore in 3D

1AYB	Download File View File

CRYSTAL STRUCTURES OF PEPTIDE COMPLEXES OF THE AMINO-TERMINAL SH2 DOMAIN OF THE SYP TYROSINE PHOSPHATASE

Lee, C.-H., Kuriyan, J.

(1994) Structure 2: 423-438

Released	1994-08-31
Method	X-RAY DIFFRACTION 3 Å
Organisms	Mus musculus
Macromolecule	PEPTIDE IRS-1-895 (protein) PROTEIN-TYROSINE PHOSPHATASE SYP (N-TERMINAL SH2 DOMAIN) (protein)

Explore in 3D

1AYC	Download File View File

CRYSTAL STRUCTURES OF PEPTIDE COMPLEXES OF THE AMINO-TERMINAL SH2 DOMAIN OF THE SYP TYROSINE PHOSPHATASE

Lee, C.-H., Kuriyan, J.

(1994) Structure 2: 423-438

Released	1994-08-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus
Macromolecule	PEPTIDE PDGFR-740 (protein) PROTEIN-TYROSINE PHOSPHATASE SYP (N-TERMINAL SH2 DOMAIN) (protein)

Explore in 3D

1BF5	Download File View File

TYROSINE PHOSPHORYLATED STAT-1/DNA COMPLEX

Kuriyan, J., Zhao, Y., Chen, X., Vinkemeier, U., Jeruzalmi, D., Darnell Jr., J.E.

(1998) Cell 93: 827-839

Released	1998-08-12
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 1-ALPHA/BETA (protein) DNA (5'-D(APCPAPGPTPTPTPCPCPCPGPTPAPAPAPTPG PC)-3') (nucleic acid) DNA (5'-D(TPGPCPAPTPTPTPAPCPGPGPGPAPAPAPCPT PG)-3') (nucleic acid)

Explore in 3D

1BG1	Download File View File

TRANSCRIPTION FACTOR STAT3B/DNA COMPLEX

Becker, S., Groner, B., Muller, C.W.

(1998) Nature 394: 145-151

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Mus musculus
Macromolecule	PROTEIN (TRANSCRIPTION FACTOR STAT3B) (protein) DNA (5'-D(TPGPCPAPTPTPTPCPCPCPGPTPAPAPAPTPCPT)-3') (nucleic acid)

Explore in 3D

1BM2	Download File View File

GRB2-SH2 DOMAIN IN COMPLEX WITH CYCLO-[N-ALPHA-ACETYL-L-THI ALYSYL-O-PHOSPHOTYROSYL-VALYL-ASPARAGYL-VALYL-PROLYL] (PKF273-791)

Rondeau, J.M., Zurini, M.

(1999) J Med Chem 42: 971-980

Released	1998-08-05
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (GROWTH FACTOR RECEPTOR BOUND PROTEIN 2) (protein) PROTEIN (PKF273-791) (protein)

Explore in 3D

1BMB	Download File View File

GRB2-SH2 DOMAIN IN COMPLEX WITH KPFY*VNVEF (PKF270-974)

Rondeau, J.M., Zurini, M.

(1999) J Med Chem 42: 971-980

Released	1998-07-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (GROWTH FACTOR RECEPTOR BOUND PROTEIN 2) (protein) PROTEIN (PKF270-974) (protein)

Explore in 3D

1CM8	Download File View File

PHOSPHORYLATED MAP KINASE P38-GAMMA

Bellon, S., Fitzgibbon, M.J., Fox, T., Hsiao, H.M., Wilson, K.P.

(1999) Structure 7: 1057-1065

Released	2000-05-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	PHOSPHORYLATED MAP KINASE P38-GAMMA (protein)
Unique Ligands	ANP, MG

Explore in 3D

1CSY	Download File View File

SYK TYROSINE KINASE C-TERMINAL SH2 DOMAIN COMPLEXED WITH A PHOSPHOPEPTIDEFROM THE GAMMA CHAIN OF THE HIGH AFFINITY IMMUNOGLOBIN G RECEPTOR, NMR

Narula, S.S., Yuan, R.W., Adams, S.E., Green, O.M., Green, J., Phillips, T.B., Zydowsky, L.D., Botfield, M.C., Hatada, M.H., Laird, E.R., Zoller, M.J., Karas, J.L., Dalgarno, D.C.

(1995) Structure 3: 1061-1073

Released	1996-11-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	ACETYL-THR-PTR-GLU-THR-LEU-NH2 (protein) SYK PROTEIN TYROSINE KINASE (protein)

Explore in 3D

1CSZ	Download File View File

SYK TYROSINE KINASE C-TERMINAL SH2 DOMAIN COMPLEXED WITH A PHOSPHOPEPTIDEFROM THE GAMMA CHAIN OF THE HIGH AFFINITY IMMUNOGLOBIN G RECEPTOR, NMR

Narula, S.S., Yuan, R.W., Adams, S.E., Green, O.M., Green, J., Phillips, T.B., Zydowsky, L.D., Botfield, M.C., Hatada, M.H., Laird, E.R., Zoller, M.J., Karas, J.L., Dalgarno, D.C.

(1995) Structure 3: 1061-1073

Released	1996-11-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	ACETYL-THR-PTR-GLU-THR-LEU-NH2 (protein) SYK PROTEIN TYROSINE KINASE (protein)

Explore in 3D

1D4W	Download File View File

CRYSTAL STRUCTURE OF THE XLP PROTEIN SAP IN COMPLEX WITH SLAM PHOSPHOPEPTIDE

Poy, F., Yaffe, M.B., Sayos, J., Saxena, K., Eck, M.J.

(1999) Mol Cell 4: 555-561

Released	1999-10-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	SIGNALING LYMPHOCYTIC ACTIVATION MOLECULE (protein) T CELL SIGNAL TRANSDUCTION MOLECULE SAP (protein)

Explore in 3D

1EEN	Download File View File

CRYSTAL STRUCTURE OF PROTEIN TYROSINE PHOSPHATASE 1B COMPLEXED WITH ACETYL-D-A-D-BPA-PTYR-L-I-P-Q-Q-G

Puius, Y.A., Zhao, Y., Almo, S.C., Zhang, Z.Y.

(2000) Biochemistry 39: 8171-8179

Released	2001-02-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	ALA-ASP-PBF-PTR-LEU-ILE-PRO (protein) PROTEIN TYROSINE PHOSPHATASE 1B (protein)
Unique Ligands	ACY, MG

Explore in 3D

1EEO	Download File View File

CRYSTAL STRUCTURE OF PROTEIN TYROSINE PHOSPHATASE 1B COMPLEXED WITH ACETYL-E-L-E-F-PTYR-M-D-Y-E-NH2

Sarmiento, M., Puius, Y.A., Vetter, S.W., Lawrence, D.S., Almo, S.C., Zhang, Z.Y.

(2000) Biochemistry 39: 8171-8179

Released	2001-02-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	ACETYL-E-L-E-F-PTYR-M-D-Y-E-NH2 PEPTIDE (protein) PROTEIN TYROSINE PHOSPHATASE 1B (protein)
Unique Ligands	MG

Explore in 3D

1F1W	Download File View File

SRC SH2 THREF1TRP MUTANT COMPLEXED WITH THE PHOSPHOPEPTIDE S(PTR)VNVQN

Kimber, M.S., Nachman, J., Cunningham, A.M., Gish, G.D., Pawson, T., Pai, E.F.

(2000) Mol Cell 5: 1043-1049

Released	2000-07-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Gallus gallus
Macromolecule	PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC (protein) S(PTR)VNVQN PHOSPHOPEPTIDE (protein)

Explore in 3D

1FBV	Download File View File

STRUCTURE OF A CBL-UBCH7 COMPLEX: RING DOMAIN FUNCTION IN UBIQUITIN-PROTEIN LIGASES

Zheng, N., Wang, P., Jeffrey, P.D., Pavletich, N.P.

(2000) Cell 102: 533-539

Released	2000-08-30
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	SIGNAL TRANSDUCTION PROTEIN CBL (protein) UBIQUITIN-CONJUGATING ENZYME E12-18 KDA UBCH7 (protein) ZAP-70 PEPTIDE (protein)
Unique Ligands	SO4, ZN

Explore in 3D

1FHR	Download File View File

SOLUTION STRUCTURE OF THE FHA2 DOMAIN OF RAD53 COMPLEXED WITH A PHOSPHOTYROSYL PEPTIDE

Byeon, I.-J.L., Liao, H., Yongkiettrakul, S., Tsai, M.-D.

(2000) J Mol Biol 302: 927-940

Released	2000-10-18
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	DNA REPAIR PROTEIN RAD9 (protein) PROTEIN KINASE SPK1 (protein)

1 to 25 of 880 Structures

Page 1 of 36

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification