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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Pseudomonas aeruginosa (3)
	Mycobacterium tuberculosis H37Rv (2)
	Staphylococcus aureus (2)
	Acinetobacter haemolyticus (1)
	Enterobacter cloacae (1)
	Enterococcus casseliflavus (1)
	Streptoalloteichus tenebrarius (1)
	Thermus thermophilus HB8 (1)

Taxonomy

Bacteria (12)

Experimental Method

X-RAY DIFFRACTION (13)

Polymer Entity Type

	Protein (12)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (5)
	2.0 - 2.5 (2)
	2.5 - 3.0 (3)
	3.5 - 4.0 (2)

Release Date

	2000 - 2004 (2)
	2010 - 2014 (6)
	2015 - 2019 (3)
	2020 - 2024 (2)

Enzyme Classification Name

	Transferases (5)
	Ligases (1)

Symmetry Type

	Cyclic (6)
	Asymmetric (6)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (2)
	Alpha and beta proteins (a/b) (1)
	Artifacts (1)

AllSelected

1 to 13 of 13 Structures

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1LC4	Download File View File

Crystal Structure of Tobramycin Bound to the Eubacterial 16S rRNA A Site

Vicens, Q., Westhof, E.

(2002) Chem Biol 9: 747-755

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.54 Å
Macromolecule	5'-R(UPUPGPCPGPUPCPAPCPAPCPCPGPGPUPGPAPAPGPUPCPGP*C)-3' (nucleic acid)
Unique Ligands	TOY

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1M4D	Download File View File

Aminoglycoside 2'-N-acetyltransferase from Mycobacterium tuberculosis-Complex with Coenzyme A and Tobramycin

Vetting, M.W., Hegde, S.S., Javid-Majd, F., Blanchard, J.S., Roderick, S.L.

(2002) Nat Struct Biol 9: 653-658

Released	2002-08-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Aminoglycoside 2'-N-acetyltransferase (protein)
Unique Ligands	COA, PAP, TOY

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3SG8	Download File View File

Crystal Structure of Aminoglycoside-2''-Phosphotransferase Type IVa Tobramycin Complex

Shi, K., Houston, D.R., Berghuis, A.M.

(2011) Biochemistry 50: 6237-6244

Released	2011-06-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Enterococcus casseliflavus
Macromolecule	APH(2'')-Id (protein)
Unique Ligands	CL, TOY

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3VET	Download File View File

Crystal structure of the O-carbamoyltransferase TobZ in complex with Tobramycin, carbamoyl phosphate and ADP

Parthier, C., Stubbs, M.T., Goerlich, S., Jaenecke, F.

(2012) Angew Chem Int Ed Engl 51: 4046-4052

Released	2012-01-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Streptoalloteichus tenebrarius
Macromolecule	O-carbamoyltransferase TobZ (protein)
Unique Ligands	ADP, CP, EDO, FE2, K, MN, TOY

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4EBK	Download File View File

Crystal structure of aminoglycoside 4'-O-adenylyltransferase ANT(4')-IIb, tobramycin-bound

Stogios, P.J., Dong, A., Minasov, G., Evdokimova, E., Egorova, O., Yim, V., Kudritska, M., Courvalin, P., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2012-04-04
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Aminoglycoside nucleotidyltransferase (protein)
Unique Ligands	CL, EDO, IOD, TOY

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4EVY	Download File View File

Crystal structure of aminoglycoside antibiotic 6'-N-acetyltransferase AAC(6')-Ig from Acinetobacter haemolyticus in complex with tobramycin

Stogios, P.J., Evdokimova, E., Minasov, G., Yim, V., Courvalin, P., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2017) ACS Infect Dis 3: 132-143

Released	2012-05-09
Method	X-RAY DIFFRACTION 1.768 Å
Organisms	Acinetobacter haemolyticus
Macromolecule	Aminoglycoside N(6')-acetyltransferase type 1 (protein)
Unique Ligands	CL, K, TOY

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4JD6	Download File View File

Crystal structure of Mycobacterium tuberculosis Eis in complex with coenzyme A and tobramycin

Biswas, T., Chen, W., Garneau-Tsodikova, S., Tsodikov, O.V.

(2013) Chembiochem 14: 2127-2135

Released	2013-10-23
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Enhanced intracellular survival protein (protein)
Unique Ligands	COA, TOY

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4LFC	Download File View File

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Demirci, H., Belardinelli, R., Carr, J., Murphy IV, F., Jogl, G., Dahlberg, A.E., Gregory, S.T.

(2013) To be published

Released	2014-07-02
Method	X-RAY DIFFRACTION 3.602 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	K, MG, TOY, ZN

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4XJE	Download File View File

CRYSTAL STRUCTURE OF ANT(2") IN COMPLEX WITH AMP AND TOBRAMYCIN

Rodionov, D., Bassenden, A.V., Berghuis, A.M.

(2020) ACS Chem Biol

Released	2016-01-20
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	AadB (protein)
Unique Ligands	AMP, GOL, TOY

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5CFS	Download File View File

Crystal Structure of ANT(2")-Ia in complex with AMPCPP and tobramycin

Rodionov, D., Bassenden, A.V., Berghuis, A.M.

(2016) ACS Chem Biol 11: 1339-1346

Released	2016-03-16
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	AAD(2''),Gentamicin 2''-nucleotidyltransferase,Gentamicin resistance protein (protein)
Unique Ligands	APC, MN, P6G, PG0, TOY

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6NP4	Download File View File

AAC-VIa bound to Tobramycin

Kumar, P., Cuneo, M.J.

(2019) Angew Chem Int Ed Engl 58: 16260-16266

Released	2019-09-25
Method	X-RAY DIFFRACTION 1.151 Å
Organisms	Enterobacter cloacae
Macromolecule	Aminoglycoside N(3)-acetyltransferase (protein)
Unique Ligands	MG, TOY

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7UUK	Download File View File

Crystal structure of aminoglycoside resistance enzyme ApmA, complex with tobramycin

Stogios, P.J., Evdokimova, E., Di Leo, R., Bordeleau, E., Wright, G.D., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID)

(2024) Nat Chem Biol 20: 234-242

Released	2023-04-19
Method	X-RAY DIFFRACTION 2.82 Å
Organisms	Staphylococcus aureus
Macromolecule	Aminocyclitol acetyltransferase ApmA (protein)
Unique Ligands	CL, TOY

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7UUO	Download File View File

Crystal structure of aminoglycoside resistance enzyme ApmA H135A mutant, complex with tobramycin and coenzyme A

Stogios, P.J., Evdokimova, E., Michalska, K., Di Leo, R., Bordeleau, E., Wright, G.D., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)

(2024) Nat Chem Biol 20: 234-242

Released	2022-11-02
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Staphylococcus aureus
Macromolecule	Aminocyclitol acetyltransferase ApmA (protein)
Unique Ligands	COA, EDO, TOY

1 to 13 of 13 Structures

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Structure Determination Methodology

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Experimental Method

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