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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

QUERY: Gene Name = "OMP"

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This query matches 81 Structures.

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1XD3	Download File View File

Crystal structure of UCHL3-UbVME complex

Misaghi, S., Galardy, P.J., Meester, W.J.N., Ovaa, H., Ploegh, H.L., Gaudet, R.

(2005) J Biological Chem 280: 1512-1520

Released	2004-11-23
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens
Macromolecule	UBC protein (protein) Ubiquitin Carboxyl-terminal esterase L3 (protein)
Unique Ligands	GVE, MG

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2F16	Download File View File

Crystal structure of the yeast 20S proteasome in complex with bortezomib

Groll, M.

(2006) Structure 14: 451-456

Released	2006-03-21
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 14
Unique Ligands	BO2

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2X4N	Download File View File

Crystal structure of MHC CLass I HLA-A2.1 bound to residual fragments of a photocleavable peptide that is cleaved upon UV-light treatment

Celie, P.H.N., Toebes, M., Rodenko, B., Ovaa, H., Perrakis, A., Schumacher, T.N.M.

(2009) J Am Chem Soc 131: 12298

Released	2010-03-02
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	BETA-2-MICROGLOBULIN (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN (protein) HLA-A2.1-RESTRICTED INFLUENZA A MATRIX EPITOPE (protein)
Unique Ligands	GOL, MES

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2X4O	Download File View File

Crystal structure of MHC CLass I HLA-A2.1 bound to HIV-1 envelope peptide env120-128

Celie, P.H.N., Toebes, M., Rodenko, B., Ovaa, H., Perrakis, A., Schumacher, T.N.M.

(2009) J Am Chem Soc 131: 12298

Released	2010-03-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	BETA-2-MICROGLOBULIN (protein) ENVELOPE GLYCOPROTEIN GP160 (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN (protein)
Unique Ligands	GOL, MES

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2X4P	Download File View File

Crystal structure of MHC CLass I HLA-A2.1 bound to a photocleavable peptide

Celie, P.H.N., Toebes, M., Rodenko, B., Ovaa, H., Perrakis, A., Schumacher, T.N.M.

(2009) J Am Chem Soc 131: 12305

Released	2010-03-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	BETA-2-MICROGLOBULIN (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2.1 (protein) HLA-A2.1-RESTRICTED INFLUENZA A MATRIX EPITOPE (protein)
Unique Ligands	GOL, MES

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2X4Q	Download File View File

Crystal structure of MHC CLass I HLA-A2.1 bound to a photocleavable peptide

Celie, P.H.N., Toebes, M., Rodenko, B., Ovaa, H., Perrakis, A., Schumacher, T.N.M.

(2009) J Am Chem Soc 131: 12305

Released	2010-03-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	BETA-2-MICROGLOBULIN (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2.1 (protein) HLA-A2.1-RESTRICTED INFLUENZA A MATRIX EPITOPE (protein)
Unique Ligands	GOL, MES

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2X4R	Download File View File

Crystal structure of MHC CLass I HLA-A2.1 bound to Cytomegalovirus (CMV) pp65 epitope

Celie, P.H.N., Toebes, M., Rodenko, B., Ovaa, H., Perrakis, A., Schumacher, T.N.M.

(2009) J Am Chem Soc 131: 12298

Released	2010-03-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Human betaherpesvirus 5
Macromolecule	65 KDA PHOSPHOPROTEIN (protein) BETA-2-MICROGLOBULIN (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2.1 (protein)
Unique Ligands	GOL

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2X4S	Download File View File

Crystal structure of MHC CLass I HLA-A2.1 bound to a peptide representing the epitope of the H5N1 (Avian Flu) Nucleoprotein

Celie, P.H.N., Toebes, M., Rodenko, B., Ovaa, H., Perrakis, A., Schumacher, T.N.M.

(2009) J Am Chem Soc 131: 12298

Released	2010-03-02
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	BETA-2-MICROGLOBULIN (protein) H5N1 INFLUENZA A NUCLEOPROTEIN (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2.1 (protein)
Unique Ligands	GOL, MES

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2X4T	Download File View File

Crystal structure of MHC CLass I HLA-A2.1 bound to a Peiodate- cleavable peptide

Rodenko, B., Toebes, M., Celie, P.H.N., Perrakis, A., Schumacher, T.N.M., Ovaa, H.

(2009) J Am Chem Soc 131: 12305

Released	2010-03-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Human betaherpesvirus 5
Macromolecule	65 KDA PHOSPHOPROTEIN (protein) BETA-2-MICROGLOBULIN (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2.1 (protein)
Unique Ligands	GOL, MES

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2X4U	Download File View File

Crystal structure of MHC CLass I HLA-A2.1 bound to HIV-1 Peptide RT468-476

Celie, P.H.N., Toebes, M., Rodenko, B., Ovaa, H., Perrakis, A., Schumacher, T.N.M.

(2009) J Am Chem Soc 131: 12298

Released	2010-03-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	BETA-2-MICROGLOBULIN (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN (protein) REVERSE TRANSCRIPTASE/RIBONUCLEASE H (protein)
Unique Ligands	GOL, MES

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2X70	Download File View File

Crystal structure of MHC CLass I HLA-A2.1 bound to a photocleavable peptide

Celie, P.H.N., Toebes, M., Rodenko, B., Ovaa, H., Perrakis, A., Schumacher, T.N.M.

(2009) J Am Chem Soc 131: 12298

Released	2010-12-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	BETA-2-MICROGLOBULIN (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2.1 (protein) HLA-A2.1-RESTRICTED INFLUENZA A MATRIX EPITOPE (protein)
Unique Ligands	GOL, MES

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2XR9	Download File View File

Crystal structure of Autotaxin (ENPP2)

Kamtekar, S., Hausmann, J., Day, J.E., Christodoulou, E., Perrakis, A.

(2011) Nat Struct Mol Biol 18: 198-204

Released	2011-01-19
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Rattus norvegicus
Macromolecule	ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY MEMBER 2 (protein)
Unique Ligands	CA, IOD, PO4, SCN, ZN
Unique branched monosaccharides	BMA, NAG

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2XRG	Download File View File

Crystal structure of Autotaxin (ENPP2) in complex with the HA155 boronic acid inhibitor

Hausmann, J., Albers, H.M.H.G., Perrakis, A.

(2011) Nat Struct Mol Biol 18: 198

Released	2011-01-19
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Rattus norvegicus
Macromolecule	ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY MEMBER 2 (protein)
Unique Ligands	CA, IOD, SWH, ZN
Unique branched monosaccharides	BMA, NAG

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2YLM	Download File View File

Mechanism of USP7 (HAUSP) activation by its C-terminal ubiquitin-like domain (HUBL) and allosteric regulation by GMP-synthetase.

Faesen, A.C., Perrakis, A., Sixma, T.K.

(2011) Mol Cell 44: 147

Released	2011-10-19
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 7 (protein)
Unique Ligands	CL

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3ZNH	Download File View File

Crimean Congo Hemorrhagic Fever Virus OTU domain in complex with ubiquitin-propargyl.

Ekkebus, R., vanKasteren, S.I., Kulathu, Y., Scholten, A., Berlin, I., deJong, A., Goerdayal, G., Neefjes, J., Heck, A.J.R., Komander, D., Ovaa, H.

(2013) J Am Chem Soc 135: 2867

Released	2013-02-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Crimean-Congo hemorrhagic fever virus strain IbAr10200 Homo sapiens
Macromolecule	POLYUBIQUITIN-B (protein) UBIQUITIN THIOESTERASE (protein)

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3ZRH	Download File View File

Crystal structure of the Lys29, Lys33-linkage-specific TRABID OTU deubiquitinase domain reveals an Ankyrin-repeat ubiquitin binding domain (AnkUBD)

Licchesi, J.D.F., Akutsu, M., Komander, D.

(2011) Nat Struct Mol Biol 19: 62

Released	2011-12-14
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Homo sapiens
Macromolecule	UBIQUITIN THIOESTERASE ZRANB1 (protein)
Unique Ligands	CL, EDO

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4BOP	Download File View File

Structure of OTUD1 OTU domain

Mevissen, T.E.T., Hospenthal, M.K., Geurink, P.P., Elliott, P.R., Akutsu, M., Arnaudo, N., Ekkebus, R., Kulathu, Y., Wauer, T., El Oualid, F., Freund, S.M.V., Ovaa, H., Komander, D.

(2013) Cell 154: 169

Released	2013-07-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	OTU DOMAIN-CONTAINING PROTEIN 1 (protein)
Unique Ligands	PO4

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4BOQ	Download File View File

Structure of OTUD2 OTU domain

Mevissen, T.E.T., Hospenthal, M.K., Geurink, P.P., Elliott, P.R., Akutsu, M., Arnaudo, N., Ekkebus, R., Kulathu, Y., Wauer, T., El Oualid, F., Freund, S.M.V., Ovaa, H., Komander, D.

(2013) Cell 154: 169

Released	2013-07-17
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Homo sapiens
Macromolecule	UBIQUITIN THIOESTERASE OTU1 (protein)
Unique Ligands	GOL

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4BOS	Download File View File

Structure of OTUD2 OTU domain in complex with Ubiquitin K11-linked peptide

Mevissen, T.E.T., Hospenthal, M.K., Geurink, P.P., Elliott, P.R., Akutsu, M., Arnaudo, N., Ekkebus, R., Kulathu, Y., Wauer, T., El Oualid, F., Freund, S.M.V., Ovaa, H., Komander, D.

(2013) Cell 154: 169

Released	2013-07-24
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	OTUD2 (protein) POLYUBIQUITIN-C (protein) UBIQUITIN THIOESTERASE OTU1 (protein)
Unique Ligands	MG, NO3

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4BOU	Download File View File

Structure of OTUD3 OTU domain

Mevissen, T.E.T., Hospenthal, M.K., Geurink, P.P., Elliott, P.R., Akutsu, M., Arnaudo, N., Ekkebus, R., Kulathu, Y., Wauer, T., El Oualid, F., Freund, S.M.V., Ovaa, H., Komander, D.

(2013) Cell 154: 169

Released	2013-07-17
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	OTU DOMAIN-CONTAINING PROTEIN 3 (protein)

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4BOZ	Download File View File

Structure of OTUD2 OTU domain in complex with K11-linked di ubiquitin

Mevissen, T.E.T., Hospenthal, M.K., Geurink, P.P., Elliott, P.R., Akutsu, M., Arnaudo, N., Ekkebus, R., Kulathu, Y., Wauer, T., El Oualid, F., Freund, S.M.V., Ovaa, H., Komander, D.

(2013) Cell 154: 169

Released	2013-07-17
Method	X-RAY DIFFRACTION 3.03 Å
Organisms	Homo sapiens
Macromolecule	UBIQUITIN THIOESTERASE OTU1 (protein) UBIQUITIN-C (protein)
Unique Ligands	GOL

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4PG9	Download File View File

MHC Class I in complex with Sendai virus nucleoprotein peptide FAPGNYPAL

Celie, P., Joosten, R.P., Perrakis, A., Neefjes, J.

(2015) Proc Natl Acad Sci U S A 112: 1505-1510

Released	2015-01-07
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus Respirovirus muris
Macromolecule	Beta-2-microglobulin (protein) H-2 class I histocompatibility antigen, K-B alpha chain (protein) Sendai virus nucleoprotein (protein)
Unique Ligands	GOL

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4PGB	Download File View File

MHC Class I in complex with modified Sendai virus nucleoprotein peptide FAPGNWPAL

Celie, P.H.N., Joosten, R.P., Perrakis, A., Neefjes, J.

(2015) Proc Natl Acad Sci U S A 112: 1505-1510

Released	2015-01-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus Respirovirus muris
Macromolecule	Beta-2-microglobulin (protein) H-2 class I histocompatibility antigen, K-B alpha chain (protein) Sendai virus nucleoprotein (protein)

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4PGC	Download File View File

MHC Class I in complex with modified Sendai virus nucleoprotein peptide FAPGN(3,5-diiodotyrosine)PAL

Celie, P., Joosten, R.P., Perrakis, A., Neefjes, J.

(2015) Proc Natl Acad Sci U S A 112: 1505-1510

Released	2015-01-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli BL21(DE3) Mus musculus Respirovirus muris
Macromolecule	Beta-2-microglobulin (protein) H-2 class I histocompatibility antigen, K-B alpha chain (protein) Sendai virus nucleoprotein (protein) Unknown helical fragment (protein)
Unique Ligands	GOL

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4PGD	Download File View File

MHC Class I in complex with modified Sendai virus nucleoprotein peptide FAPGNYPAF

Celie, P., Joosten, R.P., Perrakis, A., Neefjes, J.

(2015) Proc Natl Acad Sci U S A 112: 1505-1510

Released	2015-01-07
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mus musculus Respirovirus muris
Macromolecule	Beta-2-microglobulin (protein) H-2 class I histocompatibility antigen, K-B alpha chain (protein) Sendai virus nucleoprotein (protein)
Unique Ligands	GOL