RCSB PDB: Search

2E2E	Download File View File

TPR domain of NrfG mediates the complex formation between heme lyase and formate-dependent nitrite reductase in Escherichia Coli O157:H7

Han, D., Kim, K., Oh, J., Park, J., Kim, Y.

(2008) Proteins 70: 900-914

Released	2007-10-23
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Escherichia coli
Macromolecule	Formate-dependent nitrite reductase complex nrfG subunit (protein)
Unique Ligands	BME, IMD

2PL2	Download File View File

Crystal structure of TTC0263: a thermophilic TPR protein in Thermus thermophilus HB27

Lim, H., Kim, K., Han, D., Oh, J.

(2007) Mol Cell 24: 27-36

Released	2008-03-04
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermus thermophilus HB27
Macromolecule	Hypothetical conserved protein TTC0263 (protein)

2Q7F	Download File View File

Crystal structure of YrrB: a TPR protein with an unusual peptide-binding site

Oh, J., Han, D., Kim, K., Lim, H.

(2007) Biochem Biophys Res Commun 360: 784-790

Released	2007-08-07
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Bacillus subtilis
Macromolecule	YrrB protein (protein)

5IKY	Download File View File

Apo structure of Obc1, a bifunctional enzyme for quorum sensing-dependent oxalogenesis

Oh, J., Rhee, S.

(2016) J Biol Chem 291: 15185-15195

Released	2016-06-01
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Burkholderia thailandensis E264
Macromolecule	Oxalate biosynthetic component 1 (protein)
Unique Ligands	MG

5IKZ	Download File View File

Glycerol bound structure of Obc1, a bifunctional enzyme for quorum sensing-dependent oxalogenesis

Oh, J., Rhee, S.

(2016) J Biol Chem 291: 15185-15195

Released	2016-06-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Burkholderia thailandensis E264
Macromolecule	Oxalate biosynthetic component 1 (protein)
Unique Ligands	GOL, MG

5XU6	Download File View File

Crystal structure of inositol 1,3,4,5,6-pentakisphosphate 2-kinase (IPK1) from Cryptococcus neoformans

Oh, J., Rhee, S.

(2017) J Struct Biol 200: 118-123

Released	2017-10-04
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Cryptococcus neoformans var. grubii H99
Macromolecule	Inositol-pentakisphosphate 2-kinase (protein)
Unique Ligands	SO4

5Z5M	Download File View File

Crystal structure of (S)-allantoin synthase

Oh, J., Percudani, R., Rhee, S.

(2018) ACS Chem Biol 13: 2237-2246

Released	2018-11-21
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Phaeodactylum tricornutum CCAP 1055/1
Macromolecule	Predicted protein (protein)

6ILR	Download File View File

Structure of Arabidopsis thaliana Ribokinase in unligand form

Kang, P., Oh, J., Rhee, S.

(2019) J Struct Biol 206: 110-118

Released	2019-03-13
Method	X-RAY DIFFRACTION 1.972 Å
Organisms	Arabidopsis thaliana
Macromolecule	Ribokinase (protein)
Unique Ligands	NA, PG4

6ILS	Download File View File

Structure of Arabidopsis thaliana Ribokinase complexed with Ribose and ATP

Kang, P., Oh, J., Rhee, S.

(2019) J Struct Biol 206: 110-118

Released	2019-03-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Arabidopsis thaliana
Macromolecule	Ribokinase (protein)
Unique Ligands	ATP, NA, RIB

6ILT	Download File View File

Structure of Arabidopsis thaliana Ribokinase complexed with ATP and Magnesium ion

Kang, P., Oh, J., Rhee, S.

(2019) J Struct Biol 206: 110-118

Released	2019-03-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Arabidopsis thaliana
Macromolecule	Ribokinase (protein)
Unique Ligands	ATP, MG, NA

6UPX	Download File View File

RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 1

(2020) Proc Natl Acad Sci U S A 117: 9338-9348

Released	2020-06-10
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 3
Unique Ligands	MG, ZN

6UPY	Download File View File

RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 2E

(2020) Proc Natl Acad Sci U S A 117: 9338-9348

Released	2020-06-10
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 3
Unique Ligands	APC, MG, ZN

6UPZ	Download File View File

RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 3

(2020) Proc Natl Acad Sci U S A 117: 9338-9348

Released	2020-06-10
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 3
Unique Ligands	MG, PPV, ZN

6UQ0	Download File View File

RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 4

(2020) Proc Natl Acad Sci U S A 117: 9338-9348

Released	2020-06-10
Method	X-RAY DIFFRACTION 3.56 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 3
Unique Ligands	MG, ZN

6UQ1	Download File View File

RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 6

(2020) Proc Natl Acad Sci U S A 117: 9338-9348

Released	2020-06-10
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 3
Unique Ligands	MG, ZN

6UQ2	Download File View File

RNA polymerase II elongation complex with dG in state 1

(2020) Proc Natl Acad Sci U S A 117: 9338-9348

Released	2020-06-10
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 3
Unique Ligands	MG, ZN

6UQ3	Download File View File

RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 5

(2020) Proc Natl Acad Sci U S A 117: 9338-9348

Released	2020-06-10
Method	X-RAY DIFFRACTION 3.47 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 3
Unique Ligands	MG, PPV, ZN

7KED	Download File View File

RNA polymerase II elongation complex with unnatural base dTPT3

Oh, J., Wang, W., Wang, D.

(2021) Nat Chem Biol 17: 906-914

Released	2021-06-23
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 3
Unique Ligands	MG, ZN

7KEE	Download File View File

RNA polymerase II elongation complex with unnatural base dTPT3, rNaMTP bound to E-site

(2021) Nat Chem Biol 17: 906-914

Released	2021-06-23
Method	X-RAY DIFFRACTION 3.45 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 3
Unique Ligands	MG, WCG, ZN

7KEF	Download File View File

RNA polymerase II elongation complex with unnatural base dTPT3, rNaM in swing state

(2021) Nat Chem Biol 17: 906-914

Released	2021-06-23
Method	X-RAY DIFFRACTION 3.89 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 3
Unique Ligands	MG, WC4, ZN

7RIL	Download File View File

Crystal structure of hairpin polyamide Py-Im 1 bound to 5' CCTGACCAGG

(2022) Proc Natl Acad Sci U S A 119:

Released	2022-01-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	synthetic construct
Macromolecule	non-template DNA (nucleic acid) template DNA (nucleic acid)
Unique Ligands	5N0, ACT

7RIM	Download File View File

RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 1

(2022) Proc Natl Acad Sci U S A 119:

Released	2022-01-12
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 3
Unique Ligands	5N0, MG, ZN

7RIP	Download File View File

RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 1 soaked with CTP

(2022) Proc Natl Acad Sci U S A 119:

Released	2022-01-12
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 3
Unique Ligands	5N0, MG, PPV, ZN

7RIQ	Download File View File

RNA polymerase II elongation complex scaffold 1 without polyamide

(2022) Proc Natl Acad Sci U S A 119:

Released	2022-01-12
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 3
Unique Ligands	MG, ZN

7RIW	Download File View File

RNA polymerase II elongation complex scaffold 2, without polyamide