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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "Spt16"

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Search Summary

This query matches 90 Structures.

Refinements

Structure Determination Methodology

experimental (90)

Scientific Name of Source Organism

	Homo sapiens (22)
	Saccharomyces cerevisiae S288C (13)
	Archaeoglobus fulgidus (7)
	synthetic construct (7)
	Saccharomyces cerevisiae (5)
	Trypanosoma brucei brucei TREU927 (5)
	Caenorhabditis elegans (4)
	Arabidopsis thaliana (3)
	Bacillus subtilis subsp. subtilis str. 168 (3)
	Escherichia coli (3)

More...

Taxonomy

	Eukaryota (70)
	Archaea (9)
	Bacteria (9)
	other sequences (7)
	Riboviria (2)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (82)
	ELECTRON MICROSCOPY (8)

Polymer Entity Type

	Protein (90)
	DNA (5)
	RNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (8)
	1.5 - 2.0 (18)
	2.0 - 2.5 (26)
	2.5 - 3.0 (16)
	3.0 - 3.5 (16)
	3.5 - 4.0 (3)
	4.0 - 4.5 (1)
	> 4.5 (2)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (11)
	2010 - 2014 (14)
	2015 - 2019 (25)
	2020 - 2024 (36)

Enzyme Classification Name

	Hydrolases (30)
	Transferases (3)
	Ligases (2)
	Oxidoreductases (2)
	Isomerases (1)

Symmetry Type

	Asymmetric (56)
	Cyclic (34)
	Dihedral (2)

SCOP Classification

	All beta proteins (14)
	Alpha and beta proteins (a/b) (8)
	Alpha and beta proteins (a+b) (9)
	Artifacts (7)
	All alpha proteins (3)
	Small proteins (1)

AllSelected

1 to 25 of 90 Structures

Page 1 of 4

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1HK9	Download File View File

Crystal structure of the Hfq protein from Escherichia coli

Sauter, C., Basquin, J., Suck, D.

(2003) Nucleic Acids Res 31: 4091

Released	2003-07-24
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN HFQ (protein)

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1I4K	Download File View File

CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS AT 2.5A RESOLUTION

Toro, I., Thore, S., Mayer, C., Basquin, J., Seraphin, B., Suck, D.

(2001) EMBO J 20: 2293-2303

Released	2001-08-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	PUTATIVE SNRNP SM-LIKE PROTEIN (protein)
Unique Ligands	CIT

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1I5L	Download File View File

CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNA

Toro, I., Thore, S., Mayer, C., Basquin, J., Seraphin, B., Suck, D.

(2001) EMBO J 20: 2293-2303

Released	2001-08-28
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	PUTATIVE SNRNP SM-LIKE PROTEIN AF-SM1 (protein) 5'-R(UPUP*U)-3' (nucleic acid)
Unique Ligands	URI

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1LJO	Download File View File

CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM2) FROM ARCHAEOGLOBUS FULGIDUS AT 1.95A RESOLUTION

Toro, I., Basquin, J., Teo-Dreher, H., Suck, D.

(2002) J Mol Biol 320: 129-142

Released	2002-07-03
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	Archaeal Sm-like protein AF-Sm2 (protein)
Unique Ligands	ACY, CD

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2HSN	Download File View File

Structural basis of yeast aminoacyl-tRNA synthetase complex formation revealed by crystal structures of two binary sub-complexes

Simader, H., Koehler, C., Basquin, J., Suck, D.

(2006) Nucleic Acids Res 34: 3968-3979

Released	2006-09-05
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	GU4 nucleic-binding protein 1 (protein) Methionyl-tRNA synthetase, cytoplasmic (protein)

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2JA9	Download File View File

Structure of the N-terminal deletion of yeast exosome component Rrp40

Oddone, A., Lorentzen, E., Basquin, J., Gasch, A., Rybin, V., Conti, E., Sattler, M.

(2007) EMBO Rep 8: 63

Released	2006-12-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	EXOSOME COMPLEX EXONUCLEASE RRP40 (protein)

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2PE8	Download File View File

Crystal structure of the UHM domain of human SPF45 (free form)

Corsini, L., Basquin, J., Hothorn, M., Sattler, M.

(2007) Nat Struct Mol Biol 14: 620-629

Released	2007-06-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Splicing factor 45 (protein)

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2PEH	Download File View File

Crystal structure of the UHM domain of human SPF45 in complex with SF3b155-ULM5

Corsini, L., Basquin, J., Hothorn, M., Sattler, M.

(2007) Nat Struct Mol Biol 14: 620-629

Released	2007-06-26
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Homo sapiens
Macromolecule	Splicing factor 3B subunit 1 (protein) Splicing factor 45 (protein)

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2VNU	Download File View File

Crystal structure of Sc Rrp44

Lorentzen, E., Basquin, J., Conti, E.

(2008) Mol Cell 29: 717

Released	2008-04-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	EXOSOME COMPLEX EXONUCLEASE RRP44 (protein) 5'-R(APAPAPAPAPAPAPAPAPAP)-3' (nucleic acid)
Unique Ligands	1PE, MG, NA

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2WCW	Download File View File

1.6A resolution structure of Archaeoglobus fulgidus Hjc, a Holliday junction resolvase from an archaeal hyperthermophile

Carolis, C., Koehler, C., Sauter, C., Basquin, J., Suck, D., Toeroe, I.

To be published

Released	2009-03-24
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	HJC (protein)
Unique Ligands	ACT, NH4

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2WCZ	Download File View File

1.6A resolution structure of Archaeoglobus fulgidus Hjc, a Holliday junction resolvase from an archaeal hyperthermophile

Carolis, C., Koehler, C., Sauter, C., Basquin, J., Suck, D., Toeroe, I.

To be published

Released	2009-03-24
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	HOLLIDAY JUNCTION RESOLVASE (protein)
Unique Ligands	CL

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2WIW	Download File View File

Crystal structures of Holliday junction resolvases from Archaeoglobus fulgidus bound to DNA substrate

Carolis, C., Koehler, C., Sauter, C., Basquin, J., Suck, D., Toeroe, I.

To be published

Released	2009-05-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Archaeoglobus fulgidus synthetic construct
Macromolecule	HJC (protein) 5'-D(DCDGDGDADTDADTDCDCDGP)-3' (nucleic acid)
Unique Ligands	GOL, HEZ

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2WIZ	Download File View File

Crystal structures of Holliday junction resolvases from Archaeoglobus fulgidus bound to DNA substrate

Carolis, C., Koehler, C., Sauter, C., Basquin, J., Suck, D., Toeroe, I.

To be published

Released	2009-05-26
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Archaeoglobus fulgidus DSM 4304 synthetic construct
Macromolecule	ARCHAEAL HJC (protein) HALF-JUNCTION (nucleic acid)

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2WJ0	Download File View File

Crystal structures of Holliday junction resolvases from Archaeoglobus fulgidus bound to DNA substrate

Carolis, C., Koehler, C., Sauter, C., Basquin, J., Suck, D., Toeroe, I.

To be published

Released	2009-05-26
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Archaeoglobus fulgidus synthetic construct
Macromolecule	ARCHAEAL HJC (protein) HALF-JUNCTION (nucleic acid)
Unique Ligands	NCO

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2WP8	Download File View File

yeast rrp44 nuclease

Basquin, J., Bonneau, F., Ebert, J., Lorentzen, E., Conti, E.

(2009) Cell 139: 547

Released	2009-11-10
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	EXOSOME COMPLEX COMPONENT RRP45 (protein) EXOSOME COMPLEX COMPONENT SKI6 (protein) EXOSOME COMPLEX EXONUCLEASE DIS3 (protein)
Unique Ligands	CL, GOL

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2Y90	Download File View File

Crystal structure of Hfq riboregulator from E. coli (P6 space group)

Basquin, J., Sauter, C.

(2011) Cryst Growth Des 11: 4334

Released	2011-12-21
Method	X-RAY DIFFRACTION 2.252 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN HFQ (protein)

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2YHT	Download File View File

Crystal structure of Hfq riboregulator from E. coli (P1 space group)

Basquin, J., Sauter, C.

(2011) Cryst Growth Des 11: 4334

Released	2011-11-16
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN HFQ (protein)

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3ZGX	Download File View File

Crystal structure of the kleisin-N SMC interface in prokaryotic condensin

Burmann, F., Shin, H., Basquin, J., Soh, Y., Gimenez, V., Kim, Y., Oh, B., Gruber, S.

(2013) Nat Struct Mol Biol 20: 371

Released	2013-01-30
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Bacillus subtilis
Macromolecule	CHROMOSOME PARTITION PROTEIN SMC (protein) SEGREGATION AND CONDENSATION PROTEIN A (protein)

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4B89	Download File View File

MIF4G domain of the yeast Not1

Basquin, J., Conti, E.

(2012) Mol Cell 48: 207

Released	2012-11-21
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 1 (protein)

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4B8A	Download File View File

Structure of yeast NOT1 MIF4G domain co-crystallized with CAF1

Basquin, J., Conti, E.

(2012) Mol Cell 48: 207

Released	2012-11-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 1 (protein) POLY(A) RIBONUCLEASE POP2 (protein)

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4B8B	Download File View File

N-Terminal domain of the yeast Not1

Basquin, J., Conti, E.

(2012) Mol Cell 48: 207

Released	2012-11-21
Method	X-RAY DIFFRACTION 2.801 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 1 (protein)
Unique Ligands	AU

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4B8C	Download File View File

nuclease module of the yeast Ccr4-Not complex

Basquin, J., Conti, E.

(2012) Mol Cell 48: 207

Released	2012-11-21
Method	X-RAY DIFFRACTION 3.41 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 1 (protein) GLUCOSE-REPRESSIBLE ALCOHOL DEHYDROGENASE TRANSCRIPTIONAL EFFECTOR (protein) POLY(A) RIBONUCLEASE POP2 (protein)

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4BY6	Download File View File

Yeast Not1-Not2-Not5 complex

Bhaskar, V., Basquin, J., Conti, E.

(2013) Nat Struct Mol Biol 20: 1281

Released	2013-10-16
Method	X-RAY DIFFRACTION 2.797 Å
Organisms	Saccharomyces cerevisiae CEN.PK113-7D Saccharomyces cerevisiae S288C
Macromolecule	GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 1 (protein) GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 2 (protein) GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 5 (protein)
Unique Ligands	ACT, CA, GOL, PEG

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4CT4	Download File View File

CNOT1 MIF4G domain - DDX6 complex

Ozgur, S., Basquin, J., Conti, E.

(2014) Mol Cell 54: 751

Released	2014-05-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1 (protein) PROBABLE ATP-DEPENDENT RNA HELICASE DDX6 (protein)
Unique Ligands	CL, MG