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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 25 Structures.

Refinements

Structure Determination Methodology

experimental (25)

Scientific Name of Source Organism

	Homo sapiens (16)
	Severe acute respiratory syndrome coronavirus 2 (11)
	Severe acute respiratory syndrome-related coronavirus (2)
	Vicugna pacos (2)
	Campylobacter jejuni (1)
	Escherichia coli K-12 (1)
	Human gammaherpesvirus 8 (1)
	Human herpesvirus 4 strain B95-8 (1)
	Neogale vison (1)
	Plasmodium falciparum 3D7 (1)

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Taxonomy

	Eukaryota (22)
	Riboviria (13)
	Bacteria (2)
	Duplodnaviria (2)

Experimental Method

	X-RAY DIFFRACTION (13)
	ELECTRON MICROSCOPY (12)

Polymer Entity Type

Protein (25)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (6)
	2.5 - 3.0 (12)
	3.0 - 3.5 (6)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (1)
	2020 - 2024 (23)

Enzyme Classification Name

	Hydrolases (10)
	Transferases (4)
	Oxidoreductases (2)

Membrane Protein Annotation

	MemProtMD (2)
	PDBTM (2)
	OPM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (19)
	Cyclic (5)
	Octahedral (1)

SCOP Classification

	All alpha proteins (1)
	All beta proteins (1)
	Membrane and cell surface proteins and peptides (1)
	Alpha and beta proteins (a/b) (1)
	Artifacts (1)
	Small proteins (1)

AllSelected

1 to 25 of 25 Structures

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2QCO	Download File View File

Crystal structure of the transcriptional regulator CmeR from Campylobacter jejuni

Gu, R., Su, C., Shi, F., Li, M., McDermott, G., Zhang, Q., Yu, E.W.

(2007) J Mol Biol 372: 583-593

Released	2008-04-15
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Campylobacter jejuni
Macromolecule	CmeR (protein)
Unique Ligands	GOL

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3R24	Download File View File

Crystal structure of nsp10/nsp16 complex of SARS coronavirus

Liu, X., Guo, D., Su, C., Chen, Y.

(2011) PLoS Pathog 7: e1002294-e1002294

Released	2011-10-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	2'-O-methyl transferase (protein) Non-structural protein 10 and Non-structural protein 11 (protein)
Unique Ligands	SAM, ZN

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6LP5	Download File View File

Structure of Sinonovacula constricta ferritin

Su, X.R., Ming, T.H., Su, C.

(2020) Biochem Biophys Res Commun 524: 217-223

Released	2020-04-08
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Sinonovacula constricta
Macromolecule	Ferritin (protein)
Unique Ligands	FE, FE2, HEZ

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7CZE	Download File View File

Crystal structure of Epstein-Barr virus (EBV) gHgL and in complex with the ligand binding domian (LBD) of EphA2

Su, C., Wu, L.L., Song, H., Chai, Y., Qi, J.X., Yan, J.H., Gao, G.F.

(2020) Nat Commun 11: 5964-5964

Released	2020-10-21
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Human herpesvirus 4 strain B95-8
Macromolecule	Envelope glycoprotein H (protein) Envelope glycoprotein L (protein) Ephrin type-A receptor 2 (protein)
Unique Ligands	NAG

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7CZF	Download File View File

Crystal structure of Kaposi Sarcoma associated herpesvirus (KSHV ) gHgL in complex with the ligand binding domian (LBD) of EphA2

Su, C., Wu, L.L., Song, H., Chai, Y., Qi, J.X., Yan, J.H., Gao, G.F.

(2020) Nat Commun 11: 5964-5964

Released	2020-10-21
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens Human gammaherpesvirus 8
Macromolecule	Envelope glycoprotein H (protein) Envelope glycoprotein L (protein) Ephrin type-A receptor 2 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	FUC, MAN, NAG

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7EKC	Download File View File

Structure of SARS-CoV-2 Gamma variant spike receptor-binding domain complexed with human ACE2

Han, P.C., Su, C., Zhang, Y.F., Qi, J.X., Gao, G.F.

(2021) Nat Commun 12: 6103-6103

Released	2021-11-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Spike protein S1 (protein)
Unique Ligands	NAG, ZN
Unique branched monosaccharides	NAG

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7EKE	Download File View File

Structure of SARS-CoV-2 spike receptor-binding domain F486L mutation complexed with human ACE2

Han, P.C., Su, C., Zhang, Y.F., Qi, J.X., Gao, G.F.

(2021) Nat Commun 12: 6103-6103

Released	2021-11-03
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Spike protein S1 (protein)
Unique Ligands	NAG, ZN

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7EKF	Download File View File

Structure of SARS-CoV-2 Alpha variant spike receptor-binding domain complexed with human ACE2

Han, P.C., Su, C., Zhang, Y.F., Qi, J.X., Gao, G.F.

(2021) Nat Commun 12: 6103-6103

Released	2021-11-03
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Spike protein S1 (protein)
Unique Ligands	NAG, ZN
Unique branched monosaccharides	NAG

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7EKG	Download File View File

Structure of SARS-CoV-2 Beta variant spike receptor-binding domain complexed with human ACE2

Han, P.C., Su, C., Zhang, Y.F., Qi, J.X., Gao, G.F.

(2021) Nat Commun 12: 6103-6103

Released	2021-11-03
Method	X-RAY DIFFRACTION 2.63 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Spike protein S1 (protein)
Unique Ligands	NAG, ZN
Unique branched monosaccharides	NAG

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7EKH	Download File View File

Structure of SARS-CoV-2 spike receptor-binding domain Y453F mutation complexed with human ACE2

Han, P.C., Su, C., Zhang, Y.F., Qi, J.X., Gao, G.F.

(2021) Nat Commun 12: 6103-6103

Released	2021-11-03
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Spike protein S1 (protein)
Unique Ligands	NAG, ZN

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7JZ3	Download File View File

Osmoporin OmpC from E.coli K12

Lyu, M., Su, C., Morgan, C.E., Bolla, J.R., Robinson, C.V., Yu, E.W.

(2021) Nat Methods 18: 69-75

Released	2021-01-20
Method	ELECTRON MICROSCOPY 2.56 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein C (protein)

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7MXY	Download File View File

Cryo-EM structure of PfFNT-inhibitor complex

Yu, E.W., Su, C., Lyu, M.

(2021) EMBO Rep 22: e51628

Released	2021-12-08
Method	ELECTRON MICROSCOPY 2.18 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	Formate-nitrite transporter (protein)
Unique Ligands	HV6

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7W8S	Download File View File

Structure of SARS-CoV-2 spike receptor-binding domain Y453F mutation complexed with American mink ACE2

Su, C., Qi, J.X., Gao, G.F.

(2022) J Virol 96: e0081422-e0081422

Released	2022-08-17
Method	ELECTRON MICROSCOPY 2.85 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Spike protein S1 (protein)
Unique Ligands	ZN
Unique branched monosaccharides	NAG

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7WA1	Download File View File

Structure of SARS-CoV-2 spike receptor-binding domain F486L mutation complexed with American mink ACE2

Su, C., Qi, J.X., Gao, G.F.

(2022) J Virol 96: e0081422-e0081422

Released	2022-08-17
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Spike protein S1 (protein)
Unique Ligands	ZN

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7WA3	Download File View File

Structure of American mink ACE2

Su, C., Qi, J.X., Gao, G.F.

To be published

Released	2022-08-17
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Neogale vison
Macromolecule	Angiotensin-converting enzyme (protein)
Unique Ligands	NAG, ZN
Unique branched monosaccharides	FUC, NAG

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7WD1	Download File View File

Crystal structure of R14 bound to SARS-CoV-2 RBD

Wang, Q.H., Gao, G.F., Qi, J.X., Su, C., Liu, H.H., Wu, L.L.

(2023) Cell Rep Med 4: 100918-100918

Released	2022-12-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 Vicugna pacos
Macromolecule	R14 (protein) Spike protein S1 (protein)
Unique branched monosaccharides	FUC, NAG

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7WD2	Download File View File

Crystal structure of S43 bound to SARS-CoV-2 RBD

Wang, Q.H., Gao, G.F., Qi, J.X., Su, C., Liu, H.H., Wu, L.L.

(2023) Cell Rep Med 4: 100918-100918

Released	2022-12-21
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 Vicugna pacos
Macromolecule	Anti-RON nanobody (protein) Spike protein S1 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	FUC, NAG

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8EMR	Download File View File

Cryo-EM structure of human liver glucosidase II

Su, C., Lyu, M., Zhang, Z., Yu, E.W.

(2023) Cell Rep 42: 112609-112609

Released	2023-05-10
Method	ELECTRON MICROSCOPY 2.92 Å
Organisms	Homo sapiens
Macromolecule	Glucosidase 2 subunit beta (protein) Neutral alpha-glucosidase AB (protein)
Unique Ligands	CA
Unique branched monosaccharides	BMA, MAN, NAG

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8EMS	Download File View File

Cryo-EM structure of human liver glycogen phosphorylase

Su, C., Lyu, M., Zhang, Z., Yu, E.W.

(2023) Cell Rep 42: 112609-112609

Released	2023-05-10
Method	ELECTRON MICROSCOPY 2.65 Å
Organisms	Homo sapiens
Macromolecule	Glycogen phosphorylase, liver form (protein)
Unique Ligands	PLP

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8EMT	Download File View File

Cryo-EM analysis of the human aldehyde oxidase from liver

Su, C., Lyu, M., Zhang, Z., Yu, E.W.

(2023) Cell Rep 42: 112609-112609

Released	2023-05-10
Method	ELECTRON MICROSCOPY 2.92 Å
Organisms	Homo sapiens
Macromolecule	Aldehyde oxidase (protein)
Unique Ligands	FAD, FES, MOS, MTE

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8K4U	Download File View File

Structure of BtKY72 spike receptor-binding domain (RBD) complexed with bat ACE2

Su, C., Qi, J.X., Gao, G.F.

(2024) mBio 15: e0140424-e0140424

Released	2024-06-19
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Rhinolophus landeri Severe acute respiratory syndrome-related coronavirus
Macromolecule	ACE2 (protein) BtKY72 (protein)
Unique Ligands	ZN

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8WPW	Download File View File

Cryo-EM structure of SARS-CoV-2 XBB.1.5 receptor-binding domain (RBD) complexed with CB6 mutant,S309, and S304 antibodies

Su, C., Qi, J.X., Gao, G.F.

To be published

Released	2024-10-16
Method	ELECTRON MICROSCOPY 2.49 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Unique protein chains: 7
Unique branched monosaccharides	FUC, NAG

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8WPY	Download File View File

Cryo-EM structure of SARS-CoV-2 receptor-binding domain (RBD) complexed with CB6 mutant,S309, and S304 antibodies

Su, C., Qi, J.X., Gao, G.F.

To be published

Released	2024-10-16
Method	ELECTRON MICROSCOPY 3.02 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Unique protein chains: 7
Unique branched monosaccharides	BMA, FUC, NAG

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8WYR	Download File View File

Cryo-EM structure of human CD5L bound to IgM-Fc/J

Wang, Y.X., Su, C., Xiao, J.Y.

(2024) Nat Commun 15: 8397-8397

Released	2024-10-09
Method	ELECTRON MICROSCOPY 3.39 Å
Organisms	Homo sapiens
Macromolecule	Immunoglobulin J chain (protein) Interleukin-2,CD5 antigen-like (protein) Interleukin-2,Isoform 1 of Immunoglobulin heavy constant mu (protein)
Unique Ligands	CA, NAG
Unique branched monosaccharides	NAG

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8WYS	Download File View File

Local map of human CD5L bound to IgM-Fc/J

Wang, Y.X., Su, C., Xiao, J.Y.

(2024) Nat Commun 15: 8397-8397

Released	2024-10-09
Method	ELECTRON MICROSCOPY 3.41 Å
Organisms	Homo sapiens
Macromolecule	Immunoglobulin J chain (protein) Interleukin-2,CD5 antigen-like (protein) Interleukin-2,Isoform 1 of Immunoglobulin heavy constant mu (protein)
Unique Ligands	CA, NAG
Unique branched monosaccharides	NAG

1 to 25 of 25 Structures

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