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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

QUERY: Chem Comp Monomers (Polymer Entity Container Identifiers) = "2DT"

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This query matches 36 Structures.

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1QTM	Download File View File

DDTTP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS

Li, Y., Mitaxov, V., Waksman, G.

(1999) Proc Natl Acad Sci U S A 96: 9491-9496

Released	1999-08-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermus aquaticus
Macromolecule	DNA POLYMERASE I (protein) 5'-D(APAPAPGPCPGPCPCPGPTPGPGPTPC)-3' (nucleic acid) 5'-D(GPAPCPCPAPCPGPGPCPGPCP(2DT))-3' (nucleic acid)
Unique Ligands	MG, TTP

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1SKS	Download File View File

Binary 3' complex of T7 DNA polymerase with a DNA primer/template containing a cis-syn thymine dimer on the template

Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T.

(2004) Nat Struct Mol Biol 11: 784-790

Released	2004-07-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	DNA polymerase (protein) Thioredoxin 1 (protein) 5'-D(CPCPCP(TTD)PAPGPGPCPAPCPTPGPGPCPCPGPTPCPGPTPTPTPTPCPG)-3' (nucleic acid) 5'-D(CPGPAPAPAPAPCPGPAPCGPGPCPCPAPGPTPGPCPCP(2DT))-3' (nucleic acid)
Unique Ligands	MG

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1SKW	Download File View File

Binary 3' complex of T7 DNA polymerase with a DNA primer/template containing a disordered cis-syn thymine dimer on the template

Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T.

(2004) Nat Struct Mol Biol 11: 784-790

Released	2004-07-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	DNA polymerase (protein) thioredoxin 1 (protein) 5'-D(CPCPCP(TTD)PAPGPGPCPAPCPTPGPGPCPCPGPTPCPGPTPTPTPTPCPG)-3' (nucleic acid) 5'-D(CPGPAPAPAPAPCPGPAPCGPGPCPCPAPGPTPGPCPCP(2DT))-3' (nucleic acid)
Unique Ligands	MG

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1SL0	Download File View File

Ternary 3' complex of T7 DNA polymerase with a DNA primer/template containing a disordered cis-syn thymine dimer on the template and an incoming nucleotide

Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T.

(2004) Nat Struct Mol Biol 11: 784-790

Released	2004-07-06
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	DNA polymerase (protein) Thioredoxin 1 (protein) 5'-D(CPCPCP(TTD)PAPGPGPCPAPCPTPGPGPCPCPGPTPCPGPTPTPTPTPCPG)-3' (nucleic acid) 5'-D(CPGPAPAPAPAPCPGPAPCPGPGPCPCPAPGPTPGPCPCP(2DT))-3' (nucleic acid)
Unique Ligands	DAD, MG

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1T8E	Download File View File

T7 DNA Polymerase Ternary Complex with dCTP at the Insertion Site.

Brieba, L.G., Eichman, B.F., Kokoska, R.J., Doublie, S., Kunkel, T.A., Ellenberger, T.

(2004) EMBO J 23: 3452-3461

Released	2004-10-12
Method	X-RAY DIFFRACTION 2.54 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	DNA polymerase (protein) thioredoxin 1 (protein) 25-MER (nucleic acid) 5'-D(PCPGPAPAPAPAPCPGPAPCPGPGPCPCPAPGPTPGPCPCPAP(2DT))-3' (nucleic acid)
Unique Ligands	DCT, MES, MG, PG4, SO4

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1X9M	Download File View File

T7 DNA polymerase in complex with an N-2-acetylaminofluorene-adducted DNA

Dutta, S., Li, Y., Johnson, D., Dzantiev, L., Richardson, C.C., Romano, L.J., Ellenberger, T.

(2004) Proc Natl Acad Sci U S A 101: 16186-16191

Released	2004-10-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	DNA polymerase (protein) Thioredoxin 1 (protein) 5'-D(CPCPCP(8FG)PAPTPCPAPCPAPCPTPAPCPCPAPAPTPCPAPCPTPCPTPCPC)-3' (nucleic acid) 5'-D(GPGPAPGPAPGPTPGPAPTPTPGPGPTPAPGPTPGPTPGPAP(2DT))-3' (nucleic acid)
Unique Ligands	MG

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1X9S	Download File View File

T7 DNA polymerase in complex with a primer/template DNA containing a disordered N-2 aminofluorene on the template, crystallized with dideoxy-CTP as the incoming nucleotide.

Dutta, S., Li, Y., Johnson, D., Dzantiev, L., Richardson, C.C., Romano, L.J., Ellenberger, T.

(2004) Proc Natl Acad Sci U S A 101: 16186-16191

Released	2004-10-26
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	DNA polymerase (protein) Thioredoxin 1 (protein) 5'-D(CPCPCP(AFG)PAPTPCPAPCPAPCPTPAPCPCPAPAPTPCPAPCPTPCPTPCPC)-3' (nucleic acid) 5'-D(GPGPAPGPAPGPTPGPAPTPTGPGPTPAPGPTPGPTPGPAP(2DT))-3' (nucleic acid)
Unique Ligands	MG

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1X9W	Download File View File

T7 DNA polymerase in complex with a primer/template DNA containing a disordered N-2 aminofluorene on the template, crystallized with dideoxy-ATP as the incoming nucleotide.

Dutta, S., Li, Y., Johnson, D., Dzantiev, L., Richardson, C.C., Romano, L.J., Ellenberger, T.

(2004) Proc Natl Acad Sci U S A 101: 16186-16191

Released	2004-10-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	DNA polymerase (protein) Thioredoxin 1 (protein) 5'-D(CPCPCP(AFG)APTPCPAPCPAPCPTPAPCPCPAPAPTPCPAPCPTPCPTPCPC)-3' (nucleic acid) 5'-D(GPGPAPGPAPGPTPGPAPTPTGPGPTAPGPTPGPTPGPAP(2DT))-3' (nucleic acid)
Unique Ligands	MG

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1XSN	Download File View File

Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap and ddTTP

Garcia-Diaz, M., Bebenek, K., Krahn, J.M., Kunkel, T.A., Pedersen, L.C.

(2005) Nat Struct Mol Biol 12: 97-98

Released	2005-01-18
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase lambda (protein) 5'-D(CPAPGPTPAP(2DT))-3' (nucleic acid) 5'-D(CPGPGPCPAPAPTPAPCPTPG)-3' (nucleic acid) 5'-D(PGPCPCP*G)-3' (nucleic acid)
Unique Ligands	D3T, EDO, MG, NA

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2AJQ	Download File View File

Structure of replicative DNA polymerase provides insigts into the mechanisms for processivity, frameshifting and editing

Brieba, L., Ellenberger, T.

To be published

Released	2006-09-26
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	T7 DNA polymerase (protein) thioredoxin 1 (protein) DNA Primer (nucleic acid) DNA Template (nucleic acid)

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3BDP	Download File View File

DNA POLYMERASE I/DNA COMPLEX

Kiefer, J.R., Mao, C., Beese, L.S.

(1998) Nature 391: 304-307

Released	1999-01-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	PROTEIN (DNA POLYMERASE I) (protein) DNA (5'-D(APGPCPAPTPCPAPTPGPC)-3') (nucleic acid) DNA (5'-D(GPCPAPTPGPAPTPGPCP2DT)-3') (nucleic acid)
Unique Ligands	SO4

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3C5G	Download File View File

Structure of a ternary complex of the R517K Pol lambda mutant

Garcia-Diaz, M., Bebenek, K., Foley, M.C., Pedersen, L.C., Schlick, T., Kunkel, T.A.

(2008) EMBO Rep 9: 459-464

Released	2008-07-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase lambda (protein) DNA (5'-D(DCPDAPDGPDTPDAP(2DT))-3') (nucleic acid) DNA (5'-D(DCPDGPDGPDCPDAPDAPDTPDAPDCPDTPDG)-3') (nucleic acid) DNA (5'-D(PDGPDCPDCP*DG)-3') (nucleic acid)
Unique Ligands	D3T, EDO, MG, NA

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3GIL	Download File View File

Dpo4 extension ternary complex with oxoG(anti)-T(anti) pair

Rechkoblit, O., Malinina, L., Patel, D.J.

(2009) Structure 17: 725-736

Released	2009-05-19
Method	X-RAY DIFFRACTION 2.71 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA polymerase IV (protein) 5'-D(CPTPAPAPCP(8OG)PCPTPAPCPCPAPTPCPCPAPAPC)-3' (nucleic acid) 5'-D(GPTPTPGPGPAPTPGPGPTPAPGP*(2DT))-3' (nucleic acid)
Unique Ligands	CA, DGT

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3HWT	Download File View File

Ternary complex of DNA polymerase lambda bound to a two nucleotide gapped DNA substrate with a scrunched dA

Garcia-Diaz, M., Bebenek, K., Larrea, A.A., Pedersen, L.C., Kunkel, T.A.

To be published

Released	2009-08-25
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase lambda (protein) 5'-D(CPAPGPTPAP(2DT))-3' (nucleic acid) 5'-D(CPGPGPCPAPAPAPTPAPCPTPG)-3' (nucleic acid) 5'-D(PGPCPCPG)-3' (nucleic acid)
Unique Ligands	D3T, EDO, MG, NA

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3PV8	Download File View File

Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to DNA and ddTTP-dA in Closed Conformation

Wang, W., Beese, L.S.

(2011) Proc Natl Acad Sci U S A 108: 17644-17648

Released	2011-10-19
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Geobacillus kaustophilus
Macromolecule	DNA polymerase I (protein) DNA (5'-D(CAPTPAPAPGPAPGPTPCPAPGPG)-3') (nucleic acid) DNA (5'-D(CPCPTPGPAPCPTPCP(2DT))-3') (nucleic acid)
Unique Ligands	D3T, MG, SO4

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3RAX	Download File View File

Dpo4 extension ternary complex with 3'-terminal primer T base opposite the 1-methylguanine (M1G) lesion

Rechkoblit, O., Patel, D.J.

(2011) Structure 19: 821-832

Released	2011-06-15
Method	X-RAY DIFFRACTION 1.891 Å
Organisms	Saccharolobus solfataricus
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(CPCPTPAPAPCP(MG1)PCPTPAPCPCPAPTPCPCPAPAPCPC)-3') (nucleic acid) DNA (5'-D(GPTPTPGPGPAPTPGPGPTPAPGP*(2DT))-3') (nucleic acid)
Unique Ligands	CA, DGT

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3RBE	Download File View File

Dpo4 extension ternary complex with 3'-terminal primer t base opposite the 3-methylcytosine (m3c) lesion

Rechkoblit, O., Patel, D.J.

(2011) Structure 19: 821-832

Released	2011-06-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(CCPTPAPAPCP(ME6)PCPTPAPCPCPAPTPCPCPAPAPCPC)-3') (nucleic acid) DNA (5'-D(GPTPTPGPGPAPTPGPGPTPAPGP*(2DT))-3') (nucleic acid)
Unique Ligands	CA, DGT

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3RRH	Download File View File

Ternary Structure of the large fragment of Taq DNA polymerase bound to an abasic site and a ddTTP

Marx, A., Diederichs, K., Obeid, S.

(2012) J Biol Chem 287: 14099-14108

Released	2012-02-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermus aquaticus
Macromolecule	DNA polymerase I, thermostable (protein) (5'-D(APAPAP(3DR)PAPGPCPGPCPCPGPTPGPGPTPC)-3') (nucleic acid) (5'-D(GPAPCPCPAPCPGPGPCPGPCP(2DT))-3') (nucleic acid)
Unique Ligands	ACT, GOL, MG, PGE, TTP

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3V6K	Download File View File

Replication of N2,3-Ethenoguanine by DNA Polymerases

Zhao, L.

(2012) Angew Chem Int Ed Engl 51: 5466-5469

Released	2012-04-25
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(TPCPAPCP(EFG)PGPAPAPTPCPCPTPTPC)-3') (nucleic acid) DNA (5'-D(PGPAPAPGPGPAPTPTPCP(2DT))-3') (nucleic acid)
Unique Ligands	CA, MG, NA

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4DU1	Download File View File

RB69 DNA Polymerase Ternary Complex with dATP Opposite dT

Xia, S., Wang, J., Konigsberg, W.H.

(2012) Biochemistry 51: 4343-4353

Released	2012-05-23
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Escherichia phage RB69
Macromolecule	DNA polymerase (protein) DNA primer (nucleic acid) DNA template (nucleic acid)
Unique Ligands	CA, DTP

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4DU3	Download File View File

RB69 DNA Polymerase Ternary Complex with dDTP Opposite dT with 3-Deaza-adenine at the N-1 Position of Template Strand

Xia, S., Wang, J., Konigsberg, W.H.

(2012) Biochemistry 51: 4343-4353

Released	2012-05-23
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Escherichia phage RB69
Macromolecule	DNA polymerase (protein) DNA primer (nucleic acid) DNA template (nucleic acid)
Unique Ligands	CA, DTP

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4EZ9	Download File View File

Bacillus DNA Polymerase I Large Fragment Complex 2

Wang, W., Beese, L.S.

To be published

Released	2013-07-24
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Geobacillus kaustophilus HTA426
Macromolecule	DNA polymerase (protein) DNA (5'-D(CPAPTPTPAPGPAPGPTPCPAPGPG)-3') (nucleic acid) DNA (5'-D(CPCPTPGPAPCPTPCP(2DT))-3') (nucleic acid)
Unique Ligands	D3T, MPD, SO4

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4F3O	Download File View File

DNA Polymerase I Large Fragment Complex 5

Wang, W., Beese, L.S.

To be published

Released	2013-07-24
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Geobacillus kaustophilus HTA426 synthetic construct
Macromolecule	DNA polymerase (protein) DNA (5'-D(CAPTPGPAPGPAPGPTPCPAPGPG)-3') (nucleic acid) DNA (5'-D(CPCPTPGPAPCPTPCP(2DT))-3') (nucleic acid)
Unique Ligands	D3T, MN, MPD, SO4

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4I27	Download File View File

Ternary complex of mouse TdT with ssDNA and incoming nucleotide

Gouge, J., Delarue, M.

(2013) J Mol Biol 425: 4334-4352

Released	2013-07-24
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus
Macromolecule	DNA nucleotidylexotransferase (protein) 5'-D(APAPAPAPAPT)-3' (nucleic acid)
Unique Ligands	D3T, MG, NA

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4YFU	Download File View File

Crystal structure of open Bacillus fragment DNA polymerase bound to DNA and dTTP

Wu, E.Y.

(2015) Structure 23: 1609-1620

Released	2015-07-22
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Geobacillus stearothermophilus synthetic construct
Macromolecule	DNA polymerase (protein) Primer DNA (nucleic acid) Template DNA (nucleic acid)
Unique Ligands	SO4, TTP
Unique branched monosaccharides	FRU, GLC