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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chem Comp Monomers (Polymer Entity Container Identifiers) = "5HM"

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Search Summary

This query matches 5 Structures.

Refinements

Structure Determination Methodology

experimental (5)

Scientific Name of Source Organism

	Escherichia coli (4)
	Pyrococcus abyssi GE5 (3)
	Saccharolobus solfataricus P2 (2)

Taxonomy

	Bacteria (4)
	Archaea (3)

Experimental Method

	ELECTRON MICROSCOPY (3)
	X-RAY DIFFRACTION (2)

Polymer Entity Type

	RNA (5)
	Protein (3)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	3.0 - 3.5 (2)
	4.0 - 4.5 (1)

Release Date

	2015 - 2019 (2)
	2020 - 2024 (3)

Enzyme Classification Name

Hydrolases (2)

Symmetry Type

Asymmetric (3)

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1 to 5 of 5 Structures

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5MRX	Download File View File

27-nt SRL with a 5-hydroxymethyl cytidine modification

Ennifar, E., Micura, R.

(2017) J Org Chem

Released	2018-01-17
Method	X-RAY DIFFRACTION 0.851 Å
Organisms	Escherichia coli
Macromolecule	RNA (27-MER) (nucleic acid)

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5NQI	Download File View File

E.coli 16S rRNA Sarcin-Ricin Loop containing a 5-hydroxymethylcytosine modification

Ennifar, E., Micura, R.

(2017) J Org Chem 82: 7939-7945

Released	2017-07-26
Method	X-RAY DIFFRACTION 0.851 Å
Organisms	Escherichia coli
Macromolecule	E.Coli 27-mer SRL RNA (nucleic acid)

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6SW9	Download File View File

IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Coureux, P.-D., Mechulam, Y., Schmitt, E.

(2020) Commun Biol 3: 58-58

Released	2020-02-19
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Escherichia coli Pyrococcus abyssi GE5 Saccharolobus solfataricus P2
Macromolecule	Unique protein chains: 32 Unique nucleic acid chains: 3
Unique Ligands	GNP, MET, MG, ZN

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6SWC	Download File View File

IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Coureux, P.-D., Mechulam, Y., Schmitt, E.

(2020) Commun Biol 3: 58-58

Released	2020-02-19
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Escherichia coli Pyrococcus abyssi GE5 Saccharolobus solfataricus P2
Macromolecule	Unique protein chains: 32 Unique nucleic acid chains: 3
Unique Ligands	GNP, MET, MG, ZN

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6SWD	Download File View File

IC2 body model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Coureux, P.-D., Mechulam, Y., Schmitt, E.

(2020) Commun Biol 3: 58-58

Released	2020-02-19
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Pyrococcus abyssi GE5
Macromolecule	Unique protein chains: 17 Unique nucleic acid chains: 2
Unique Ligands	MG, ZN

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Structure Determination Methodology

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