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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chem Comp Monomers (Polymer Entity Container Identifiers) = "CY3"

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Homo sapiens (4)
	synthetic construct (4)
	Mus musculus (3)
	Rattus norvegicus (3)
	Conus geographus (2)
	Conus stercusmuscarum (2)
	Aplysia californica (1)
	Conus imperialis (1)
	Conus purpurascens (1)
	Conus radiatus (1)

More...

Taxonomy

	Eukaryota (13)
	other sequences (4)
	Bacteria (1)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (9)
	SOLUTION NMR (5)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (15)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (3)
	2.5 - 3.0 (1)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (5)
	2005 - 2009 (3)
	2015 - 2019 (4)
	2020 - 2024 (3)

Enzyme Classification Name

	Oxidoreductases (3)
	Transferases (1)
	Hydrolases (1)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (14)
	Cyclic (2)
	Dihedral (1)

SCOP Classification

Peptides (5)

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1 to 15 of 15 Structures

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1D7T	Download File View File

NMR STRUCTURE OF AN ENGINEERED CONTRYPHAN CYCLIC PEPTIDE (MOTIF CPXXPXC)

Pallaghy, P.K., Norton, R.S.

(2000) Biopolymers 54: 173-179

Released	2000-09-13
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	YNK-CONTRYPHAN (protein)

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1DFY	Download File View File

NMR STRUCTURE OF CONTRYPHAN-SM CYCLIC PEPTIDE (MAJOR FORM-CIS)

Pallaghy, P.K., He, W., Jimenez, E.C., Olivera, B.M., Norton, R.S.

(2000) Biochemistry 39: 12845-12852

Released	2002-05-01
Method	SOLUTION NMR
Organisms	Conus stercusmuscarum
Macromolecule	CONTRYPHAN-SM (protein)

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1DFZ	Download File View File

NMR STRUCTURE OF CONTRYPHAN-SM CYCLIC PEPTIDE (MINOR FORM-TRANS)

Pallaghy, P.K., He, W., Jimenez, E.C., Olivera, B.M., Norton, R.S.

(2000) Biochemistry 39: 12845-12852

Released	2002-05-01
Method	SOLUTION NMR
Organisms	Conus stercusmuscarum
Macromolecule	CONTRYPHAN-SM (protein)

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1DG0	Download File View File

NMR STRUCTURE OF DES[GLY1]-CONTRYPHAN-R CYCLIC PEPTIDE (MAJOR FORM)

Pallaghy, P.K., He, W., Jimenez, E.C., Olivera, B.M., Norton, R.S.

(2000) Biochemistry 39: 12845-12852

Released	2003-09-09
Method	SOLUTION NMR
Organisms	Conus radiatus
Macromolecule	DES[GLY1]-CONTRYPHAN-R (protein)

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1R9I	Download File View File

NMR Solution Structure of PIIIA toxin, NMR, 20 structures

Nielsen, K.J., Watson, M., Adams, D.J., Hammarstrom, A.K., Gage, P.W., Hill, J.M., Craik, D.J., Thomas, L., Adams, D., Alewood, P.F., Lewis, R.J.

(2002) J Biological Chem 277: 27247-27255

Released	2003-11-18
Method	SOLUTION NMR
Organisms	Conus purpurascens
Macromolecule	Mu-conotoxin PIIIA (protein)

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2BYP	Download File View File

Crystal structure of Aplysia californica AChBP in complex with alpha- conotoxin ImI

Hansen, S.B., Sulzenbacher, G., Huxford, T., Marchot, P., Taylor, P., Bourne, Y.

(2005) EMBO J 24: 3635

Released	2005-10-05
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Aplysia californica Conus imperialis
Macromolecule	ALPHA-CONOTOXIN IMI (protein) SOLUBLE ACETYLCHOLINE RECEPTOR (protein)
Unique Ligands	NAG

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2V1S	Download File View File

CRYSTAL STRUCTURE OF RAT TOM20-ALDH PRESEQUENCE COMPLEX

Obita, T., Igura, M., Ose, T., Endo, T., Maenaka, K., Kohda, D.

(2007) EMBO J 26: 4777

Released	2007-06-12
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Rattus norvegicus
Macromolecule	ALDEHYDE DEHYDROGENASE (protein) MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20 HOMOLOG (protein)

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2V1T	Download File View File

CRYSTAL STRUCTURE OF RAT TOM20-ALDH PRESEQUENCE COMPLEX

Obita, T., Igura, M., Ose, T., Endo, T., Maenaka, K., Kohda, D.

(2007) EMBO J 26: 4777

Released	2007-06-12
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Rattus norvegicus
Macromolecule	ALDEHYDE DEHYDROGENASE (protein) MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20 HOMOLOG (protein)

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5AZ8	Download File View File

Crystal structure of MBP-Tom20 fusion protein tethered with ALDH presequence via a disulfide bond

Matsuoka, R., Kohda, D.

(2016) Protein Sci 25: 754-768

Released	2016-01-13
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli K-12 Rattus norvegicus
Macromolecule	Maltose-binding periplasmic protein,Mitochondrial import receptor subunit TOM20 homolog (protein) peptide GPRLSRLLSYAGC (protein)
Unique Ligands	AAC
Unique branched monosaccharides	GLC

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5HYQ	Download File View File

Cetuximab Fab in complex with amidated meditope

Bzymek, K.P., Williams, J.C.

(2016) Acta Crystallogr F Struct Biol Commun 72: 434-442

Released	2016-06-15
Method	X-RAY DIFFRACTION 2.477 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	Amidated meditope (protein) Cetuximab heavy chain (protein) Cetuximab light chain (protein)
Unique Ligands	PO4

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5JYQ	Download File View File

Structure of Conus Geographus insulin G1

Lawrence, M.C., Menting, J., Norton, R.S., Safavi-Hemami, H.

(2016) Nat Struct Mol Biol 23: 916-920

Released	2016-09-07
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Conus geographus
Macromolecule	Insulin 1 (protein) Insulin 1b (protein)
Unique Ligands	SO4

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6DN8	Download File View File

SPRY domain-containing SOCS box protein 2 complexed with (GZJ)VDINNN(CY3) Cyclic peptide inhibitor

Law, R.H.P., Caradoc-Davies, T.T., Norton, R.S.

(2018) ACS Chem Biol 13: 2930-2938

Released	2019-04-17
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	(GZJ)VDINNN(CY3) Cyclic peptide inhibitor (protein) SPRY domain-containing SOCS box protein 4 (protein)
Unique Ligands	ACT, SO4

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6VEQ	Download File View File

Con-Ins G1 in complex with the human insulin microreceptor in turn in complex with Fv 83-7

Menting, J.G., Chou, D.H.-C., Lawrence, M.C., Xiong, X.

(2020) Nat Struct Mol Biol 27: 615-624

Released	2020-06-03
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Conus geographus Homo sapiens Mus musculus
Macromolecule	Unique protein chains: 6
Unique Ligands	NAG, SO4
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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7AUE	Download File View File

Melanocortin receptor 4 (MC4R) Gs protein complex

Degtjarik, O., Israeli, H., Prabahar, V., Shalev-Benami, M.

(2021) Science 372: 808-814

Released	2021-04-28
Method	ELECTRON MICROSCOPY 2.97 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	Unique protein chains: 6
Unique Ligands	CA

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7Z8O	Download File View File

Crystal structure of SARS-CoV-2 S RBD in complex with a stapled peptide

Brear, P., Chen, L., Gaynor, K., Harman, M., Dods, R., Hyvonen, M.

(2023) Nat Commun 14: 3583-3583

Released	2023-06-28
Method	X-RAY DIFFRACTION 0.96 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	Spike protein S1 (protein) Stapled peptide (protein)
Unique Ligands	GOL, KZ0

1 to 15 of 15 Structures

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