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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chem Comp Monomers (Polymer Entity Container Identifiers) = "IML"

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Search Summary

This query matches 29 Structures.

Refinements

Structure Determination Methodology

experimental (29)

Scientific Name of Source Organism

	Omphalotus olearius (9)
	Homo sapiens (7)
	Shewanella oneidensis MR-1 (6)
	synthetic construct (6)
	Dendrothele bispora CBS 962.96 (1)
	Iris severe mosaic virus (1)
	Moorena bouillonii (1)
	Mycena rosella (1)
	Saccharomyces cerevisiae S288C (1)
	Shewanella oneidensis (1)

More...

Taxonomy

	Eukaryota (20)
	Bacteria (9)
	other sequences (6)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (24)
	SOLUTION NMR (3)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (29)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (5)
	2.0 - 2.5 (15)
	2.5 - 3.0 (4)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (1)
	2005 - 2009 (1)
	2015 - 2019 (7)
	2020 - 2024 (17)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (3)
	Isomerases (2)

Membrane Protein Annotation

	OPM (2)
	PDBTM (2)
	mpstruc (2)

Symmetry Type

	Asymmetric (12)
	Cyclic (15)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a+b) (1)
	All beta proteins (1)

AllSelected

1 to 25 of 29 Structures

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1CWM	Download File View File

HUMAN CYCLOPHILIN A COMPLEXED WITH 4 MEILE CYCLOSPORIN

Mikol, V., Kallen, J., Taylor, P., Walkinshaw, M.D.

(1998) J Mol Biology 283: 435

Released	1998-07-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Tolypocladium inflatum
Macromolecule	CYCLOSPORIN A (protein) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A (protein)

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1G65	Download File View File

Crystal structure of epoxomicin:20s proteasome reveals a molecular basis for selectivity of alpha,beta-epoxyketone proteasome inhibitors

Groll, M., Kim, K.B., Kairies, N., Huber, R., Crews, C.

(2000) J Am Chem Soc 122: 1237-1238

Released	2000-11-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 15
Unique Ligands	MG

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3HJD	Download File View File

X-ray structure of monomeric variant of HNP1

Lubkowski, J., Pazgier, M., Lu, W.

To be published

Released	2009-10-13
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Human neutrophil peptide 1 (protein)

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5LF0	Download File View File

Human 20S proteasome complex with Epoxomicin at 2.4 Angstrom

Schrader, J., Henneberg, F., Mata, R., Tittmann, K., Schneider, T.R., Stark, H., Bourenkov, G., Chari, A.

(2016) Science 353: 594-598

Released	2016-08-17
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 15
Unique Ligands	1PE, CL, K, MG

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5N0Q	Download File View File

Crystal structure of OphA-DeltaC6 in complex with SAH

Naismith, J.H., Song, H.

(2018) Sci Adv 4: eaat2720-eaat2720

Released	2018-02-14
Method	X-RAY DIFFRACTION 2.402 Å
Organisms	Omphalotus olearius
Macromolecule	Peptide N-methyltransferase (protein)
Unique Ligands	SAH

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5N0X	Download File View File

Crystal structure of OphA-DeltaC6 in complex with SAM

Song, H., Naismith, J.H.

(2018) Sci Adv 4: eaat2720-eaat2720

Released	2018-02-14
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Omphalotus olearius
Macromolecule	Peptide N-Methyltransferase (protein)
Unique Ligands	EDO, MG, SAM

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5N4I	Download File View File

Crystal structure of OphA-DeltaC6 mutant W400A in complex with SAM

Song, H., Naismith, J.H.

(2018) Sci Adv 4: eaat2720-eaat2720

Released	2018-02-28
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Omphalotus olearius
Macromolecule	Peptide N-methyltransferase (protein)
Unique Ligands	BCT, GOL, MLI, SAM, SCN

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5OUF	Download File View File

Crystal structure of OphA-DeltaC6 mutant W400A in complex with Sinefungin

Song, H., Naismith, J.H.

(2018) Sci Adv 4: eaat2720-eaat2720

Released	2018-09-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Omphalotus olearius
Macromolecule	OphA peptide N-methyltransferase (protein)
Unique Ligands	BCT, SCN, SFG

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5OVT	Download File View File

Thiobacillus denitrificans BPH in complex with Epoxomicin

Fuchs, A.C.D., Albrecht, R., Martin, J., Hartmann, M.D.

(2018) J Biological Chem 293: 920-930

Released	2017-12-06
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Thiobacillus denitrificans synthetic construct
Macromolecule	BPH (protein) Epoxomicin (protein)
Unique Ligands	PO4

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6MJG	Download File View File

Structure of dbOphMA in Complex with SAH and Methylated Peptide

Ongpipattanakul, C., Nair, S.K.

(2018) ACS Chem Biol 13: 2989-2999

Released	2018-10-03
Method	X-RAY DIFFRACTION 2.123 Å
Organisms	Dendrothele bispora CBS 962.96
Macromolecule	fusion protein of dbOphMA and methylated peptide (protein)
Unique Ligands	SAH, ZN

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7BAG	Download File View File

C3b in complex with CP40

Lamers, C., Xue, X., Smiesko, M., van Son, H., Wagner, B., Sfyroera, G., Gros, P., Lambris, J., Ricklin, D.

(2022) Nat Commun 13: 5519-5519

Released	2022-01-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Complement C3 (protein) Compstatin CP40 (protein)
Unique Ligands	ACM, CA, NH2, PEG
Unique branched monosaccharides	NAG

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7LTC	Download File View File

Structure of the alpha-N-methyltransferase (SonM) and RiPP precursor (SonA) heteromeric complex (no cofactor)

Miller, F.S., Crone, K.K., Jensen, M.R., Shaw, S., Harcombe, W.R., Elias, M., Freeman, M.F.

(2021) Nat Commun 12: 5355-5355

Released	2021-09-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Shewanella oneidensis MR-1
Macromolecule	LigA domain-containing protein (protein) TP-methylase family protein (protein)

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7LTE	Download File View File

Structure of the alpha-N-methyltransferase (SonM) and RiPP precursor (SonA) heteromeric complex (with SAH)

Miller, F.S., Crone, K.K., Jensen, M.R., Shaw, S., Harcombe, W.R., Elias, M., Freeman, M.F.

(2021) Nat Commun 12: 5355-5355

Released	2021-09-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Shewanella oneidensis MR-1
Macromolecule	LigA domain-containing protein (protein) TP-methylase family protein (protein)
Unique Ligands	SAH

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7LTF	Download File View File

Structure of the alpha-N-methyltransferase (SonM mutant Y58F) and RiPP precursor (SonA) heteromeric complex (no cofactor)

Miller, F.S., Crone, K.K., Jensen, M.R., Shaw, S., Harcombe, W.R., Elias, M., Freeman, M.F.

(2021) Nat Commun 12: 5355-5355

Released	2021-09-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Shewanella oneidensis MR-1
Macromolecule	LigA domain-containing protein (protein) TP-methylase family protein (protein)

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7LTH	Download File View File

Structure of the alpha-N-methyltransferase (SonM mutant Y93F) and RiPP precursor (SonA) heteromeric complex (no cofactor)

Miller, F.S., Crone, K.K., Jensen, M.R., Shaw, S., Harcombe, W.R., Elias, M., Freeman, M.F.

(2021) Nat Commun 12: 5355-5355

Released	2021-09-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Shewanella oneidensis MR-1
Macromolecule	LigA domain-containing protein (protein) TP-methylase family protein (protein)

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7TWK	Download File View File

Structure of a borosin methyltransferase from Mycena rosella with native peptide (MroMA1) in complex with SAH

Zheng, Y., Ongpipattanakul, C., Nair, S.K.

(2022) ACS Catal 12: 14006-14014

Released	2022-11-02
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Mycena rosella
Macromolecule	MroMA1 (protein)
Unique Ligands	GOL, SAH

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7XGJ	Download File View File

Crystal structure of human MMP-2 catalytic domain in complex with inhibitor

Kamitani, M., Mima, M., Takeuchi, T.

(2022) J Med Chem 65: 8493-8510

Released	2022-06-29
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Iris severe mosaic virus
Macromolecule	GZS-ASN-ASP-ALA-LEU-IML-EOE-NH2 (protein) Matrix metalloproteinase-2 (protein)
Unique Ligands	CA, ZN

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7ZB0	Download File View File

macrocyclase OphP with 15mer

Song, H., Naismith, J.H.

(2022) bioRxiv

Released	2022-07-06
Method	X-RAY DIFFRACTION 2.47 Å
Organisms	Omphalotus olearius
Macromolecule	15mer (protein) Prolyl endopeptidase (protein)
Unique Ligands	BCT, EDO, NA, PEG

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7ZB1	Download File View File

S580A with 18mer

Song, H., Naismith, J.H.

(2022) bioRxiv

Released	2022-07-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Omphalotus olearius
Macromolecule	18mer (protein) Prolyl endopeptidase (protein)
Unique Ligands	BCT, EDO, GOL, NA

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8DNY	Download File View File

Cryo-EM structure of the human Sec61 complex inhibited by decatransin

Park, E., Itskanov, S.

(2023) Nat Chem Biol 19: 1063-1071

Released	2023-05-24
Method	ELECTRON MICROSCOPY 2.85 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Decatransin peptide inhibitor (protein) Protein transport protein Sec61 subunit alpha isoform 1 (protein) Protein transport protein Sec61 subunit beta (protein) Protein transport protein Sec61 subunit gamma (protein)

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8DNZ	Download File View File

Cryo-EM structure of the human Sec61 complex inhibited by apratoxin F

Park, E., Itskanov, S.

(2023) Nat Chem Biol 19: 1063-1071

Released	2023-05-24
Method	ELECTRON MICROSCOPY 2.57 Å
Organisms	Homo sapiens Moorena bouillonii
Macromolecule	Apratoxin F peptide inhibitor (protein) Protein transport protein Sec61 subunit alpha isoform 1 (protein) Protein transport protein Sec61 subunit beta (protein) Protein transport protein Sec61 subunit gamma (protein)

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8GJC	Download File View File

X-ray crystallographic structure of a beta-hairpin peptide derived from Abeta 17-35. (ORN)LVFFAED(ORN)GAI(N-Me-Ile)GLM

Kreutzer, A.G., Ruttenberg, S.M., Nowick, J.S.

(2024) Biochemistry 63: 212-218

Released	2024-01-17
Method	X-RAY DIFFRACTION 1.431 Å
Organisms	synthetic construct
Macromolecule	beta-hairpin peptide derived from Abeta 17-35 (protein)
Unique Ligands	MET, PEG, TFA

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8QAQ	Download File View File

Conformations of macrocyclic peptides sampled by exact NOEs: models for cell-permeability. Conformation 1 of omphalotin A in apolar solvents.

Ruedisser, S.H., Matabaro, E., Sonderegger, L., Guentert, P., Kuenzler, M., Gossert, A.D.

(2023) J Am Chem Soc 145: 27601-27615

Released	2023-12-06
Method	SOLUTION NMR
Organisms	Omphalotus olearius
Macromolecule	TRP-MVA-ILE-MVA-MVA-SAR-MVA-IML-SAR-VAL-IML-SAR (protein)

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8QAS	Download File View File

Conformations of macrocyclic peptides sampled by exact NOEs: models for cell-permeability. NMR structure of Omphalotin A in methanol / water indoleOut conformation.

Ruedisser, S.H., Matabaro, E., Sonderegger, L., Guentert, P., Kuenzler, M., Gossert, A.D.

(2023) J Am Chem Soc 145: 27601-27615

Released	2023-12-06
Method	SOLUTION NMR
Organisms	Omphalotus olearius
Macromolecule	TRP-MVA-ILE-MVA-MVA-SAR-MVA-IML-SAR-VAL-IML-SAR (protein)

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8QBP	Download File View File

Conformations of macrocyclic peptides sampled by exact NOEs: models for cell-permeability. NMR structure of Omphalotin A in methanol / water indoleOut conformation.

Ruedisser, S.H., Matabaro, E., Sonderegger, L., Guentert, P., Kuenzler, M., Gossert, A.D.

(2023) J Am Chem Soc 145: 27601-27615

Released	2023-12-13
Method	SOLUTION NMR
Organisms	Omphalotus olearius
Macromolecule	TRP-MVA-ILE-MVA-MVA-SAR-MVA-IML-SAR-VAL-IML-SAR (protein)

1 to 25 of 29 Structures

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