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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 12860128

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Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Oryctolagus cuniculus (3)
	Thermus thermophilus HB27 (3)
	synthetic construct (3)
	Escherichia coli (2)
	Escherichia coli K-12 (2)
	Alcaligenes sp. (1)
	Aspergillus terreus (1)
	Candida albicans SC5314 (1)
	Haloarcula marismortui (1)
	Saccharomyces cerevisiae S288C (1)

Taxonomy

	Eukaryota (6)
	Bacteria (3)
	other sequences (3)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (6)
	ELECTRON MICROSCOPY (4)

Polymer Entity Type

	Protein (10)
	RNA (9)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.5 - 3.0 (1)
	3.0 - 3.5 (6)
	3.5 - 4.0 (1)
	4.0 - 4.5 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (1)
	2010 - 2014 (2)
	2015 - 2019 (2)
	2020 - 2024 (4)

Enzyme Classification Name

	Lyases (3)
	Hydrolases (1)

Symmetry Type

	Asymmetric (9)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (2)
	Alpha and beta proteins (a+b) (1)
	All beta proteins (1)
	Small proteins (1)
	All alpha proteins (1)
	Peptides (1)

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1 to 10 of 10 Structures

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1KC8	Download File View File

Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit

Hansen, J.L., Ban, N., Nissen, P., Moore, P.B., Steitz, T.A.

(2003) J Mol Biol 330: 1061-1075

Released	2003-07-22
Method	X-RAY DIFFRACTION 3.01 Å
Organisms	Haloarcula marismortui
Macromolecule	Unique protein chains: 28 Unique nucleic acid chains: 2
Unique Ligands	BLS, CD, CL, K, MG, NA

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2Z3I	Download File View File

Crystal structure of blasticidin S deaminase (BSD) mutant E56Q complexed with substrate

Kumasaka, T., Yamamoto, M., Furuichi, M., Nakasako, M., Kimura, M., Yamaguchi, I., Ueki, T.

(2007) J Biol Chem 282: 37103-37111

Released	2007-10-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aspergillus terreus
Macromolecule	Blasticidin-S deaminase (protein)
Unique Ligands	BLS, CAC, ZN

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4U56	Download File View File

Crystal structure of Blasticidin S bound to the yeast 80S ribosome

Garreau de Loubresse, N., Prokhorova, I., Yusupova, G., Yusupov, M.

(2014) Nature 513: 517-522

Released	2014-10-22
Method	X-RAY DIFFRACTION 3.45 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 80 Unique nucleic acid chains: 4
Unique Ligands	BLS, MG, OHX, ZN

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4V9Q	Download File View File

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Svidritskiy, E., Ling, C., Ermolenko, D.N., Korostelev, A.A.

(2013) Proc Natl Acad Sci U S A 110: 12283-12288

Released	2014-07-09
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Alcaligenes sp. Thermus thermophilus HB27 synthetic construct
Macromolecule	Unique protein chains: 48 Unique nucleic acid chains: 5
Unique Ligands	BLS, MG, ZN

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6B4V	Download File View File

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Svidritskiy, E., Korostelev, A.A.

(2018) J Mol Biol 430: 591-593

Released	2018-02-07
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Escherichia coli Escherichia coli K-12 Thermus thermophilus HB27 synthetic construct
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 5
Unique Ligands	BLS, MG, ZN

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6BOH	Download File View File

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Svidritskiy, E., Korostelev, A.A.

(2018) Structure 26: 821

Released	2018-05-23
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Escherichia coli Escherichia coli K-12 Thermus thermophilus HB27 synthetic construct
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 5
Unique Ligands	BLS, MG, ZN

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7NWG	Download File View File

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Powers, K.T., Yadav, S.K.N., Bufton, J.C., Schaffitzel, C.

(2021) Nucleic Acids Res 49: 7665-7679

Released	2021-07-07
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Unique protein chains: 79 Unique nucleic acid chains: 7
Unique Ligands	BLS, MG, ZN

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7NWH	Download File View File

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Powers, K.T., Yadav, S.K.N., Bufton, J.C., Schaffitzel, C.

(2021) Nucleic Acids Res 49: 7665-7679

Released	2021-07-07
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Unique protein chains: 79 Unique nucleic acid chains: 5
Unique Ligands	BLS, GCP, MG, ZN

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7NWI	Download File View File

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Powers, K.T., Yadav, S.K.N., Bufton, J.C., Schaffitzel, C.

(2021) Nucleic Acids Res 49: 7665-7679

Released	2021-07-07
Method	ELECTRON MICROSCOPY 3.13 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Unique protein chains: 78 Unique nucleic acid chains: 6
Unique Ligands	BLS, MG, ZN

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7Q0R	Download File View File

Structure of the Candida albicans 80S ribosome in complex with blasticidin s

Kolosova, O., Zgadzay, Y., Stetsenko, A., Jenner, L., Guskov, A., Yusupova, G., Yusupov, M.

(2022) Sci Adv 8: eabn1062-eabn1062

Released	2022-05-25
Method	ELECTRON MICROSCOPY 2.67 Å
Organisms	Candida albicans SC5314
Macromolecule	Unique protein chains: 75 Unique nucleic acid chains: 5
Unique Ligands	BLS, SPD, ZN

1 to 10 of 10 Structures

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