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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 16310781

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Search Summary

This query matches 20 Structures.

Refinements

Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Podisus maculiventris (9)
	Homo sapiens (8)
	Murid gammaherpesvirus 4 (2)
	Bacillus subtilis (1)
	Human herpesvirus 4 strain B95-8 (1)
	Psophocarpus tetragonolobus (1)
	Salmonella enterica subsp. enterica serovar Saintpaul str. SARA26 (1)

Taxonomy

	Eukaryota (17)
	Duplodnaviria (3)
	Bacteria (2)
	Eukaryota (eukaryotes) (1)

Experimental Method

	SOLUTION NMR (10)
	X-RAY DIFFRACTION (10)

Polymer Entity Type

Protein (20)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (3)
	2.0 - 2.5 (3)
	2.5 - 3.0 (3)

Release Date

	1995 - 1999 (1)
	2005 - 2009 (2)
	2010 - 2014 (2)
	2015 - 2019 (14)
	2020 - 2024 (1)

Enzyme Classification Name

Hydrolases (2)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Cyclic (11)
	Asymmetric (9)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (2)
	All beta proteins (1)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 20 of 20 Structures

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1QD9	Download File View File

Bacillus subtilis YABJ

Smith, J.L., Sinha, S., Rappu, P., Lange, S.C., Mantsala, P., Zalkin, H.

(1999) Proc Natl Acad Sci U S A 96: 13074-13079

Released	1999-11-26
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacillus subtilis
Macromolecule	PURINE REGULATORY PROTEIN YABJ (protein)
Unique Ligands	ACY, EMC, HG

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2D3S	Download File View File

Crystal Structure of basic winged bean lectin with Tn-antigen

Kulkarni, K.A., Sinha, S., Katiyar, S., Surolia, A., Vijayan, M., Suguna, K.

(2005) FEBS Lett 579: 6775-6780

Released	2006-01-17
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Psophocarpus tetragonolobus
Macromolecule	Basic agglutinin (protein)
Unique Ligands	A2G, CA, MN, NAG, SER
Unique branched monosaccharides	BMA, FUC, NAG

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3DVU	Download File View File

Crystal structure of the complex of murine gamma-herpesvirus 68 Bcl-2 homolog M11 and the Beclin 1 BH3 domain

Sinha, S.

(2008) Autophagy 4: 989-997

Released	2008-10-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Murid gammaherpesvirus 4
Macromolecule	Beclin-1 (protein) V-bcl-2 (protein)

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4MI8	Download File View File

Crystal structure of the complex of murine gamma-herpesvirus 68 Bcl-2 homolog M11 and a Beclin 1 BH3 domain-derived peptide

Su, M., Mei, Y., Sinha, S.

(2014) J Biol Chem 289: 8029-8040

Released	2014-01-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens Murid gammaherpesvirus 4
Macromolecule	Bcl-2 homolog (Gene 16?) (protein) Beclin-1 (protein)
Unique Ligands	SO4

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4P2S	Download File View File

Alanine Scanning Mutagenesis Identifies an Asparagine-Arginine-Lysine Triad Essential to Assembly of the Shell of the Pdu Microcompartment

Sinha, S., Cheng, S., Sung, Y.W., McNamara, D.E., Sawaya, M.R., Yeates, T.O., Bobik, T.A.

(2014) J Mol Biol 426: 2328

Released	2014-05-14
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Salmonella enterica subsp. enterica serovar Saintpaul str. SARA26
Macromolecule	Putative propanediol utilization protein PduA (protein)
Unique Ligands	GOL, SO4, TRS

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5EFM	Download File View File

Beclin 1 Flexible-helical Domian (FHD) (141-171)

Sinha, S., Mei, Y.

(2016) Biochemistry 55: 1945-1958

Released	2016-07-20
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Beclin-1 (protein)
Unique Ligands	SO4

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5HHE	Download File View File

Human Beclin 1 coiled-coil domain

Mei, Y., Sinha, S.

(2016) Biochemistry 55: 4239-4253

Released	2016-07-20
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Homo sapiens
Macromolecule	Beclin-1 (protein)

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5K7B	Download File View File

Beclin 2 CCD homodimer

Su, M., Sinha, S.

(2017) Protein Sci 26: 972-984

Released	2017-03-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Beclin-2 (protein)

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5K9L	Download File View File

Beclin 2 CCD N187L mutant homodimer

Su, M., Sinha, S.

(2017) Protein Sci 26: 972-984

Released	2017-03-08
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Homo sapiens
Macromolecule	Beclin-2 (protein)

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5XO3	Download File View File

Thanatin M21F Free

Sinha, S., Bhattacharjya, S.

To be published

Released	2018-06-27
Method	SOLUTION NMR
Organisms	Podisus maculiventris
Macromolecule	Thanatin (protein)

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5XO4	Download File View File

Free Thanatin at 298K

Sinha, S., Bhattacharjya, S.

To be published

Released	2018-06-27
Method	SOLUTION NMR
Organisms	Podisus maculiventris
Macromolecule	Thanatin (protein)

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5XO5	Download File View File

Free Thanatin Y10A M21A

Sinha, S., Bhattacharjya, S.

To be published

Released	2018-06-27
Method	SOLUTION NMR
Organisms	Podisus maculiventris
Macromolecule	Thanatin (protein)

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5XO9	Download File View File

Thanatin in presence of LPS

Sinha, S., Bhattacharjya, S.

To be published

Released	2018-06-27
Method	SOLUTION NMR
Organisms	Podisus maculiventris
Macromolecule	Thanatin (protein)

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5XOA	Download File View File

Thanatin M21F in complex with LPS

Sinha, S., Bhattacharyya, S.

To be published

Released	2018-06-27
Method	SOLUTION NMR
Organisms	Podisus maculiventris
Macromolecule	Thanatin (protein)

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5XOK	Download File View File

Thanatin Y10M21AA in complex with LPS

Sinha, S., Bhattacharjya, S.

To be published

Released	2018-07-04
Method	SOLUTION NMR
Organisms	Podisus maculiventris
Macromolecule	Thanatin (protein)

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5XOL	Download File View File

Thanatin R13R14AA in complex with LPS

Sinha, S., Bhattacharjya, S.

To be published

Released	2018-07-04
Method	SOLUTION NMR
Organisms	Podisus maculiventris
Macromolecule	Thanatin (protein)

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6A8Y	Download File View File

YR26_SDS

Sinha, S., Bhattacharjya, S.

To be published

Released	2019-07-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	YR26_SDS (protein)

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6AAB	Download File View File

Thanatin in presence of DPC

Sinha, S., Bhattacharjya, S.

To be published

Released	2019-07-24
Method	SOLUTION NMR
Organisms	Podisus maculiventris
Macromolecule	Thanatin (protein)

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6AFQ	Download File View File

Thanatin M21F in presence of DPC

Bhattacharjya, S., Sinha, S.

To be published

Released	2019-08-14
Method	SOLUTION NMR
Organisms	Podisus maculiventris
Macromolecule	Thanatin (protein)

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8SM5	Download File View File

Crystal Structure of BHRF1 from Epstein Barr Virus in complex with BID BH3 peptide

Wyatt, S., Sinha, S.

(2023) Biochemistry 62: 2934-2951

Released	2023-10-11
Method	X-RAY DIFFRACTION 2.61002612546 Å
Organisms	Homo sapiens Human herpesvirus 4 strain B95-8
Macromolecule	Apoptosis regulator BHRF1 (protein) BID BH3 (protein)