RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: PubMed ID = 24777102

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Bacillus paralicheniformis (13)
	Zika virus (5)
	synthetic construct (1)

Taxonomy

	Bacteria (13)
	Riboviria (5)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (18)

Polymer Entity Type

	Protein (18)
	RNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (13)
	2.0 - 2.5 (5)

Release Date

	2015 - 2019 (5)
	2020 - 2024 (13)

Symmetry Type

	Dihedral (13)
	Asymmetric (5)

SCOP Classification

Alpha and beta proteins (a/b) (4)

AllSelected

1 to 18 of 18 Structures

Page 1 of 1

Sort by

Explore in 3D

5GJB	Download File View File

Zika virus NS3 helicase in complex with ssRNA

Tian, H.L., Ji, X.Y., Yang, X.Y., Zhang, Z.X., Lu, Z.K., Yang, K.L., Chen, C., Zhao, Q., Chi, H., Mu, Z.Y., Xie, W., Wang, Z.F., Lou, H.Q., Yang, H.T., Rao, Z.H.

(2016) Protein Cell 7: 562-570

Released	2016-07-20
Method	X-RAY DIFFRACTION 1.702 Å
Organisms	Zika virus synthetic construct
Macromolecule	NS3 helicase (protein) RNA (5'-R(APGPAPUPCPAP*A)-3') (nucleic acid)

Explore in 3D

5GJC	Download File View File

Zika virus NS3 helicase in complex with ATP

Tian, H.L., Ji, X.Y., Yang, X.Y., Zhang, Z.X., Lu, Z.K., Yang, K.L., Chen, C., Zhao, Q., Chi, H., Mu, Z.Y., Xie, W., Wang, Z.F., Lou, H.Q., Yang, H.T., Rao, Z.H.

(2016) Protein Cell 7: 562-570

Released	2016-07-20
Method	X-RAY DIFFRACTION 2.204 Å
Organisms	Zika virus
Macromolecule	NS3 helicase (protein)
Unique Ligands	ATP, MN

Explore in 3D

5JMT	Download File View File

Crystal structure of Zika virus NS3 helicase

Tian, H., Ji, X., Yang, X., Xie, W., Yang, K., Chen, C., Wu, C., Chi, H., Mu, Z., Wang, Z., Yang, H.

(2016) Protein Cell 7: 450-454

Released	2016-05-25
Method	X-RAY DIFFRACTION 1.796 Å
Organisms	Zika virus
Macromolecule	NS3 helicase (protein)

Explore in 3D

5Y6M	Download File View File

Zika virus helicase in complex with ADP-AlF3

Yang, X.Y., Chen, C., Tian, H.L., Chi, H., Mu, Z.Y., Zhang, T.Q., Yang, K.L., Zhao, Q., Liu, X.H., Wang, Z.F., Ji, X.Y., Yang, H.T.

(2018) FASEB J 32: 5250-5257

Released	2018-07-04
Method	X-RAY DIFFRACTION 2.002 Å
Organisms	Zika virus
Macromolecule	Helicase domain from Genome polyprotein (protein)
Unique Ligands	ADP, AF3, MN

Explore in 3D

5Y6N	Download File View File

Zika virus helicase in complex with ADP

Yang, X.Y., Chen, C., Tian, H.L., Chi, H., Mu, Z.Y., Zhang, T.Q., Yang, K.L., Zhao, Q., Liu, X.H., Wang, Z.F., Ji, X.Y., Yang, H.T.

(2018) FASEB J 32: 5250-5257

Released	2018-07-04
Method	X-RAY DIFFRACTION 1.571 Å
Organisms	Zika virus
Macromolecule	Helicase domain from Genome polyprotein (protein)
Unique Ligands	ADP, MN

Explore in 3D

8H44	Download File View File

Blasnase-P55N

Lu, F., Wang, W., Chi, H., Ran, T.

To be published

Released	2023-10-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus paralicheniformis
Macromolecule	L-asparaginase (protein)
Unique Ligands	FMT, MG

Explore in 3D

8H45	Download File View File

Blasnase-T13A/P55N

Lu, F., Wang, W., Chi, H., Ran, T.

To be published

Released	2023-10-18
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Bacillus paralicheniformis
Macromolecule	L-asparaginase (protein)
Unique Ligands	FMT, MG

Explore in 3D

8H46	Download File View File

Blasnase-T13A/P55N with L-asn

Lu, F., Wang, W., Chi, H., Ran, T.

To be published

Released	2023-10-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus paralicheniformis
Macromolecule	L-asparaginase (protein)
Unique Ligands	ASN, FMT, GOL, MG

Explore in 3D

8H47	Download File View File

Blasnase-T13A/P55F

Lu, F., Wang, W., Chi, H., Ran, T.

To be published

Released	2023-10-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus paralicheniformis
Macromolecule	L-asparaginase (protein)
Unique Ligands	FMT, GOL, MG

Explore in 3D

8H48	Download File View File

Blasnase-T13A/P55F with L-asn

Lu, F., Wang, W., Chi, H., Ran, T.

To be published

Released	2023-10-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus paralicheniformis
Macromolecule	L-asparaginase (protein)
Unique Ligands	ASN, FMT, MG

Explore in 3D

8H49	Download File View File

Blasnase-M57P

Lu, F., Wang, W., Chi, H., Ran, T.

To be published

Released	2023-10-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus paralicheniformis
Macromolecule	L-asparaginase (protein)
Unique Ligands	FMT, MG

Explore in 3D

8H4A	Download File View File

Blasnase-T13A/M57P

Lu, F., Wang, W., Chi, H., Ran, T.

To be published

Released	2023-10-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus paralicheniformis
Macromolecule	L-asparaginase (protein)
Unique Ligands	FMT, MG

Explore in 3D

8H4B	Download File View File

Blasnase-T13A/M57P with L-asn

Lu, F., Wang, W., Chi, H., Ran, T.

To be published

Released	2023-10-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus paralicheniformis
Macromolecule	L-asparaginase (protein)
Unique Ligands	ASN, FMT, MG

Explore in 3D

8H4C	Download File View File

Blasnase-T13A/M57P

Lu, F., Wang, W., Chi, H., Ran, T.

To be published

Released	2023-10-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Bacillus paralicheniformis
Macromolecule	L-asparaginase (protein)
Unique Ligands	FMT, MG

Explore in 3D

8H4D	Download File View File

Blasnase-T13A/M57N

Lu, F., Wang, W., Chi, H., Ran, T.

To be published

Released	2023-10-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus paralicheniformis
Macromolecule	L-asparaginase (protein)
Unique Ligands	FMT, GOL, MG

Explore in 3D

8H4E	Download File View File

Blasnase-T13A/P55N with D-asn

Lu, F., Wang, W., Chi, H., Ran, T.

To be published

Released	2023-10-18
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Bacillus paralicheniformis
Macromolecule	L-asparaginase (protein)
Unique Ligands	DSG, FMT, MG

Explore in 3D

8H4F	Download File View File

Blasnase-T13A/P55F with D-asn

Lu, F., Wang, W., Chi, H., Ran, T.

To be published

Released	2023-11-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus paralicheniformis
Macromolecule	L-asparaginase (protein)
Unique Ligands	DSG, FMT, MG

Explore in 3D

8H4G	Download File View File

Blasnase-T13A/M57N

Lu, F., Wang, W., Chi, H., Ran, T.

To be published

Released	2023-10-18
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Bacillus paralicheniformis
Macromolecule	L-asparaginase (protein)
Unique Ligands	FMT, MG

1 to 18 of 18 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification