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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 27445306

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Search Summary

This query matches 57 Structures.

Refinements

Structure Determination Methodology

experimental (57)

Scientific Name of Source Organism

	Homo sapiens (35)
	unidentified adenovirus (12)
	Mus musculus (4)
	Saccharomyces cerevisiae (4)
	Xenopus laevis (4)
	Chlamydomonas reinhardtii (3)
	Eptatretus burgeri (3)
	Paraclostridium sordellii ATCC 9714 (3)
	Arabidopsis thaliana (2)
	Paraclostridium sordellii (2)

More...

Taxonomy

	Eukaryota (53)
	Varidnaviria (12)
	Bacteria (5)
	other sequences (1)

Experimental Method

	ELECTRON MICROSCOPY (52)
	X-RAY DIFFRACTION (5)

Polymer Entity Type

	Protein (56)
	RNA (30)
	DNA (3)
	NA-hybrid (1)

Refinement Resolution (Å)

	2.5 - 3.0 (21)
	3.0 - 3.5 (20)
	3.5 - 4.0 (6)
	4.0 - 4.5 (5)
	> 4.5 (5)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (12)
	2020 - 2024 (44)

Enzyme Classification Name

	Hydrolases (44)
	Isomerases (21)
	Transferases (22)
	Lyases (2)
	Oxidoreductases (2)

Membrane Protein Annotation

	PDBTM (3)
	MemProtMD (1)
	OPM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (54)
	Cyclic (3)

SCOP Classification

	All beta proteins (4)
	Alpha and beta proteins (a+b) (3)
	Small proteins (3)
	Alpha and beta proteins (a/b) (3)
	Coiled coil proteins (3)

AllSelected

1 to 25 of 57 Structures

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3P2D	Download File View File

Crystal structure of arrestin-3 reveals the basis of the difference in receptor binding between two non-visual subtypes

Spiller, B.W., Gurevich, V.V., Zhan, X., Gimenez, L.E.

(2011) J Mol Biology 406: 467-478

Released	2011-01-26
Method	X-RAY DIFFRACTION 3 Å
Organisms	Bos taurus
Macromolecule	Beta-arrestin-2 (protein)

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5IJB	Download File View File

The ligand-free structure of the mouse TLR4/MD-2 complex

Wang, Y., Su, L., Morin, M.D., Jones, B.T., Whitby, L.R., Surakattula, M., Huang, H., Shi, H., Choi, J.H., Wang, K., Moresco, E.M., Berger, M., Zhan, X., Zhang, H., Boger, D.L., Beutler, B.

(2016) Proc Natl Acad Sci U S A 113: E884-E893

Released	2016-04-27
Method	X-RAY DIFFRACTION 2.91 Å
Organisms	Eptatretus burgeri Mus musculus
Macromolecule	Lymphocyte antigen 96 (protein) Toll-like receptor 4, Variable lymphocyte receptor B chimera (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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5IJC	Download File View File

The crystal structure of mouse TLR4/MD-2/neoseptin-3 complex

Wang, Y., Su, L., Morin, M.D., Jones, B.T., Whitby, L.R., Surakattula, M., Huang, H., Shi, H., Choi, J.H., Wang, K., Moresco, E.M., Berger, M., Zhan, X., Zhang, H., Boger, D.L., Beutler, B.

(2016) Proc Natl Acad Sci U S A 113: E884-E893

Released	2016-04-27
Method	X-RAY DIFFRACTION 2.57 Å
Organisms	Eptatretus burgeri Mus musculus
Macromolecule	Lymphocyte antigen 96 (protein) Toll-like receptor 4,Variable lymphocyte receptor B (protein)
Unique Ligands	NAG, V2A
Unique branched monosaccharides	NAG

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5IJD	Download File View File

The crystal structure of mouse TLR4/MD-2/lipid A complex

Wang, Y., Su, L., Morin, M.D., Jones, B.T., Whitby, L.R., Surakattula, M., Huang, H., Shi, H., Choi, J.H., Wang, K., Moresco, E.M., Berger, M., Zhan, X., Zhang, H., Boger, D.L., Beutler, B.

(2016) Proc Natl Acad Sci U S A 113: E884-E893

Released	2016-04-27
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Eptatretus burgeri Mus musculus
Macromolecule	Lymphocyte antigen 96 (protein) Toll-like receptor 4, Variable lymphocyte receptor B chimera (protein)
Unique Ligands	DAO, LP4, LP5, MYR, NAG
Unique branched monosaccharides	NAG

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5YZG	Download File View File

The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolution

Zhan, X., Yan, C., Zhang, X., Lei, J., Shi, Y.

(2018) Science 359: 537-545

Released	2018-08-08
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 41 Unique nucleic acid chains: 4
Unique Ligands	ADP, ATP, GTP, IHP, MG, ZN

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5Z56	Download File View File

cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom.

Zhang, X., Yan, C., Zhan, X., Li, L., Lei, J., Shi, Y.

(2018) Cell Res 28: 307-322

Released	2018-09-19
Method	ELECTRON MICROSCOPY 5.1 Å
Organisms	Homo sapiens unidentified adenovirus
Macromolecule	Unique protein chains: 45 Unique nucleic acid chains: 4
Unique Ligands	GTP, IHP, MG, ZN

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5Z57	Download File View File

Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstrom

Zhang, X., Yan, C., Zhan, X., Li, L., Lei, J., Shi, Y.

(2018) Cell Res 28: 307-322

Released	2018-09-19
Method	ELECTRON MICROSCOPY 6.5 Å
Organisms	Homo sapiens unidentified adenovirus
Macromolecule	Unique protein chains: 43 Unique nucleic acid chains: 4
Unique Ligands	ALA, GTP, IHP, MG, ZN

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5Z58	Download File View File

Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom.

Zhang, X., Yan, C., Zhan, X., Li, L., Lei, J., Shi, Y.

(2018) Cell Res 28: 307-322

Released	2018-09-19
Method	ELECTRON MICROSCOPY 4.9 Å
Organisms	Homo sapiens unidentified adenovirus
Macromolecule	Unique protein chains: 35 Unique nucleic acid chains: 4
Unique Ligands	GTP, IHP, MG, ZN

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6AH0	Download File View File

The Cryo-EM Structure of the Precusor of Human Pre-catalytic Spliceosome (pre-B complex)

Zhan, X., Yan, C., Zhang, X., Shi, Y.

(2018) Cell Res 28: 1129-1140

Released	2018-11-14
Method	ELECTRON MICROSCOPY 5.7 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 38 Unique nucleic acid chains: 5
Unique Ligands	GTP, IHP, MG

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6AHD	Download File View File

The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolution

Zhan, X., Yan, C., Zhang, X., Shi, Y.

(2018) Cell Res 28: 1129-1140

Released	2018-11-14
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 44 Unique nucleic acid chains: 5
Unique Ligands	GTP, IHP, MG

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6ICZ	Download File View File

Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom

Zhang, X., Zhan, X., Yan, C., Shi, Y.

(2019) Cell Res 29: 274-285

Released	2019-03-13
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 37 Unique nucleic acid chains: 4
Unique Ligands	ATP, GTP, IHP, MG, ZN

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6ID0	Download File View File

Cryo-EM structure of a human intron lariat spliceosome prior to Prp43 loaded (ILS1 complex) at 2.9 angstrom resolution

Zhang, X., Zhan, X., Yan, C., Shi, Y.

(2019) Cell Res 29: 274-285

Released	2019-03-13
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 28 Unique nucleic acid chains: 4
Unique Ligands	GTP, IHP, MG, ZN

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6ID1	Download File View File

Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolution

Zhang, X., Zhan, X., Yan, C., Shi, Y.

(2019) Cell Res 29: 274-285

Released	2019-03-13
Method	ELECTRON MICROSCOPY 2.86 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 4
Unique Ligands	GTP, IHP, MG, ZN

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6LT0	Download File View File

cryo-EM structure of C9ORF72-SMCR8-WDR41

Tang, D., Sheng, J., Xu, L., Zhan, X., Yan, C., Qi, S.

(2020) Proc Natl Acad Sci U S A 117: 9876-9883

Released	2020-04-15
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens
Macromolecule	Guanine nucleotide exchange C9orf72 (protein) Guanine nucleotide exchange protein SMCR8 (protein) WD repeat-containing protein 41 (protein)

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7D7E	Download File View File

Structure of PKD1L3-CTD/PKD2L1 in apo state

Su, Q., Chen, M., Li, B., Wang, Y., Jing, D., Zhan, X., Yu, Y., Shi, Y.

(2021) Nat Commun 12: 4871-4871

Released	2021-08-25
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Mus musculus
Macromolecule	Polycystic kidney disease 2-like 1 protein (protein) Polycystic kidney disease protein 1-like 3 (protein)
Unique Ligands	CA, NAG

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7EVN	Download File View File

The cryo-EM structure of the DDX42-SF3b complex

Zhang, X., Zhan, X., Shi, Y.

(2024) Nat Struct Mol Biol

Released	2022-08-03
Method	ELECTRON MICROSCOPY 2.6 Å
Organisms	Homo sapiens
Macromolecule	ATP-dependent RNA helicase DDX42 (protein) PHD finger-like domain-containing protein 5A (protein) Splicing factor 3B subunit 1 (protein) Splicing factor 3B subunit 3 (protein) Splicing factor 3B subunit 5 (protein)
Unique Ligands	ZN

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7EVO	Download File View File

The cryo-EM structure of the human 17S U2 snRNP

Zhang, X., Zhan, X., Shi, Y.

(2024) Nat Struct Mol Biol

Released	2022-08-03
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	9B0, ZN

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7FIK	Download File View File

The cryo-EM structure of the CR subunit from X. laevis NPC

Shi, Y., Huang, G., Zhan, X.

(2022) Science 376: eabl8280-eabl8280

Released	2022-11-09
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Xenopus laevis
Macromolecule	Unique protein chains: 16

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7FIL	Download File View File

The cryo-EM structure of the NTD2 from the X. laevis Nup358

Shi, Y., Zhan, X., Huang, G.

(2022) Science 376: eabl8280-eabl8280

Released	2022-06-01
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Xenopus laevis
Macromolecule	Nup358 complex, clamps (protein)

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7VPX	Download File View File

The cryo-EM structure of the human pre-A complex

Zhang, X., Zhan, X., Shi, Y.

(2024) Nat Struct Mol Biol

Released	2023-05-03
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens unidentified adenovirus
Macromolecule	Unique protein chains: 24 Unique nucleic acid chains: 4
Unique Ligands	SJT, ZN

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7W59	Download File View File

The cryo-EM structure of human pre-C*-I complex

Zhan, X., Lu, Y., Shi, Y.

(2022) Mol Cell 82: 2769-2778.e4

Released	2022-06-22
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens unidentified adenovirus
Macromolecule	Unique protein chains: 35 Unique nucleic acid chains: 5
Unique Ligands	ATP, GTP, IHP, MG, ZN

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7W5A	Download File View File

The cryo-EM structure of human pre-C*-II complex

Zhan, X., Lu, Y., Shi, Y.

(2022) Mol Cell 82: 2769-2778.e4

Released	2022-06-22
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens unidentified adenovirus
Macromolecule	Unique protein chains: 39 Unique nucleic acid chains: 5
Unique Ligands	ATP, GTP, IHP, MG, ZN

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7W5B	Download File View File

The cryo-EM structure of human C* complex

Zhan, X., Lu, Y., Shi, Y.

(2022) Mol Cell 82: 2769-2778.e4

Released	2022-06-22
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Homo sapiens unidentified adenovirus
Macromolecule	Unique protein chains: 40 Unique nucleic acid chains: 5
Unique Ligands	ATP, GTP, IHP, MG, ZN

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7WB4	Download File View File

Cryo-EM structure of the NR subunit from X. laevis NPC

Huang, G., Zhan, X., Shi, Y.

(2022) Cell Res 32: 349-358

Released	2022-03-02
Method	ELECTRON MICROSCOPY 5.6 Å
Organisms	Xenopus laevis
Macromolecule	Unique protein chains: 13

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7WKK	Download File View File

Cryo-EM structure of the IR subunit from X. laevis NPC

Huang, G., Zhan, X., Shi, Y.

(2022) Cell Res 32: 451-460

Released	2022-03-30
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Xenopus laevis
Macromolecule	Unique protein chains: 9

1 to 25 of 57 Structures

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