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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 39702771

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Search Summary

This query matches 120 Structures.

Refinements

Structure Determination Methodology

experimental (120)

Scientific Name of Source Organism

	Homo sapiens (57)
	synthetic construct (10)
	Banna virus (8)
	Severe acute respiratory syndrome coronavirus 2 (7)
	Mus musculus (6)
	Pseudomonas aeruginosa (6)
	Streptococcus pneumoniae D39 (5)
	Acetivibrio thermocellus (3)
	Chromobacterium violaceum (3)
	Helicoverpa armigera nucleopolyhedrovirus (3)

More...

Taxonomy

	Eukaryota (69)
	Bacteria (28)
	Riboviria (27)
	other sequences (10)
	Archaea (4)
	Naldaviricetes (4)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (73)
	ELECTRON MICROSCOPY (43)
	SOLUTION NMR (4)

Polymer Entity Type

	Protein (119)
	DNA (11)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (20)
	2.0 - 2.5 (27)
	2.5 - 3.0 (31)
	3.0 - 3.5 (19)
	3.5 - 4.0 (8)
	4.0 - 4.5 (3)
	> 4.5 (5)

Release Date

	2005 - 2009 (4)
	2010 - 2014 (15)
	2015 - 2019 (34)
	2020 - 2024 (64)
	2025 - 2029 (3)

Enzyme Classification Name

	Hydrolases (34)
	Oxidoreductases (14)
	Transferases (9)
	Lyases (3)
	Ligases (1)
	Translocases (1)

Membrane Protein Annotation

	PDBTM (15)
	mpstruc (8)
	OPM (8)
	MemProtMD (9)

Symmetry Type

	Asymmetric (62)
	Cyclic (46)
	Dihedral (6)
	Icosahedral (6)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a/b) (14)
	All beta proteins (5)
	All alpha proteins (4)
	Alpha and beta proteins (a+b) (4)
	Artifacts (3)
	Membrane and cell surface proteins and peptides (2)

AllSelected

1 to 25 of 120 Structures

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1SG0	Download File View File

Crystal structure analysis of QR2 in complex with resveratrol

Buryanovskyy, L., Fu, Y., Boyd, M., Ma, Y., Tsieh, T.C., Wu, J.M., Zhang, Z.

(2004) Biochemistry 43: 11417-11426

Released	2005-01-25
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	NRH dehydrogenase [quinone] 2 (protein)
Unique Ligands	FAD, STL, ZN

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1XI2	Download File View File

Quinone Reductase 2 in Complex with Cancer Prodrug CB1954

Fu, Y., Buryanovskyy, L., Zhang, Z.

(2005) Biochem Biophys Res Commun 336: 332-338

Released	2005-08-30
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	NRH dehydrogenase [quinone] 2 (protein)
Unique Ligands	CB1, FAD, ZN

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2MRY	Download File View File

NMR solution structure of copper binding protein in the apo form

Fu, Y., Wu, H., Bruce, K., Giedroc, D.

(2016) Metallomics 8: 61-70

Released	2015-07-29
Method	SOLUTION NMR
Organisms	Streptococcus pneumoniae D39
Macromolecule	Uncharacterized protein (protein)

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2QMY	Download File View File

Quinone Reductase 2 in complex with adrenochrome

Zhang, Z., Fu, Y., Buryanovskky, L.

To be published

Released	2008-06-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Ribosyldihydronicotinamide dehydrogenase (protein)
Unique Ligands	AD1, FAD, ZN

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2QMZ	Download File View File

Quinone Reductase 2 in Complex with Dopamine

Fu, Y., Buryanovskyy, L., Zhang, Z.

To be published

Released	2008-06-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Ribosyldihydronicotinamide dehydrogenase (protein)
Unique Ligands	FAD, LDP, ZN

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2WGN	Download File View File

Pseudomonas aeruginosa ICP

Fu, Y., Smith, B.O.

(2009) Ph D Thesis

Released	2010-07-07
Method	SOLUTION NMR
Organisms	Pseudomonas aeruginosa
Macromolecule	INHIBITOR OF CYSTEINE PEPTIDASE COMPND 3 (protein)

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4F2E	Download File View File

Crystal structure of the Streptococcus pneumoniae D39 copper chaperone CupA with Cu(I)

Fu, Y., Dann III, C.E., Giedroc, D.P.

(2013) Nat Chem Biol 9: 177-183

Released	2013-01-30
Method	X-RAY DIFFRACTION 1.449 Å
Organisms	Streptococcus pneumoniae D39
Macromolecule	CupA (protein)
Unique Ligands	CL, CU1

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4F2F	Download File View File

Crystal structure of the metal binding domain (MBD) of the Streptococcus pneumoniae D39 Cu(I) exporting P-type ATPase CopA with Cu(I)

Fu, Y., Dann III, C.E., Giedroc, D.P.

(2013) Nat Chem Biol 9: 177-183

Released	2013-01-30
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptococcus pneumoniae D39
Macromolecule	Cation-transporting ATPase, E1-E2 family protein (protein)
Unique Ligands	CL, CU1

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4FDG	Download File View File

Crystal Structure of an Archaeal MCM Filament

Slaymaker, I.M., Fu, Y., Brewster, A.B., Chen, X.S.

(2013) Nucleic Acids Res 41: 3446-3456

Released	2013-03-06
Method	X-RAY DIFFRACTION 4.1 Å
Organisms	Saccharolobus solfataricus
Macromolecule	Minichromosome maintenance protein MCM (protein)
Unique Ligands	ZN

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4HWL	Download File View File

Crystal Structure Analysis of the Bacteriorhodopsin in Facial Amphiphile-7 DMPC Bicelle

Lee, S., Stout, C.D., Zhang, Q.

(2013) Proc Natl Acad Sci U S A 110: E1203-E1211

Released	2013-03-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Halobacterium salinarum
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	GOL, HEX, HP6, RET

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4HYX	Download File View File

Crystal Structure Analysis of the Bacteriorhodopsin in Facial Amphiphile-4 DMPC Bicelle

Lee, S., Stout, C.D., Zhang, Q.

(2013) Proc Natl Acad Sci U S A 110: E1203-E1211

Released	2013-03-20
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Halobacterium salinarum
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	C14, D10, GOL, HEX, OCT, RET

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4ME3	Download File View File

1.8 Angstrom Crystal Structure of the N-terminal Domain of an Archaeal MCM

Fu, Y., Slaymaker, I.M., Wang, G., Chen, X.S.

(2014) J Mol Biol 426: 1512-1523

Released	2014-01-08
Method	X-RAY DIFFRACTION 1.794 Å
Organisms	Thermoplasma acidophilum
Macromolecule	DNA replication licensing factor MCM related protein (protein)
Unique Ligands	ZN

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4N0S	Download File View File

Complex of ERK2 with caffeic acid

Kurinov, I., Malakhova, M.

(2014) Cancer Prev Res (phila) 7: 1056-1066

Released	2014-08-27
Method	X-RAY DIFFRACTION 1.7992 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	DHC, DMS, PEG, SO4

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4NPL	Download File View File

Crystal structure of Zebrafish ALKBH5 in complex with alpha-ketoglutarate

He, C., Chen, W., Zhang, L.

(2014) FEBS Lett 588: 892-898

Released	2014-02-19
Method	X-RAY DIFFRACTION 1.651 Å
Organisms	Danio rerio
Macromolecule	RNA demethylase ALKBH5 (protein)
Unique Ligands	AKG, MN

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4NPM	Download File View File

Crystal structure of Zebrafish ALKBH5 in complex with succinic acid

He, C., Chen, W., Zhang, L.

(2014) FEBS Lett 588: 892-898

Released	2014-02-19
Method	X-RAY DIFFRACTION 1.803 Å
Organisms	Danio rerio
Macromolecule	RNA demethylase ALKBH5 (protein)
Unique Ligands	MN, SIN

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4OVA	Download File View File

Structure of the two tandem Tudor domains and a new identified KH0 domain from human Fragile X Mental Retardation Protein

Chen, Z.H., Chen, Z.Z.

(2015) Nat Commun 6: 6634-6634

Released	2015-02-25
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Fragile X mental retardation protein 1 (protein)
Unique Ligands	TRS

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4P0P	Download File View File

Crystal structure of Human Mus81-Eme1 in complex with 5'-flap DNA, and Mg2+

Gwon, G.H., Baek, K., Cho, Y.

(2014) EMBO J 33: 1061-1072

Released	2014-05-28
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Crossover junction endonuclease EME1 (protein) Crossover junction endonuclease MUS81 (protein) DNA GAATGTGTGTCTCAATC (nucleic acid) DNA GGATTG (nucleic acid) DNA TAACCAGACACACATT (nucleic acid)
Unique Ligands	MG

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4P0Q	Download File View File

Crystal structure of Human Mus81-Eme1 in complex with 5'-flap DNA

Gwon, G.H., Baek, K., Cho, Y.

(2014) EMBO J 33: 1061-1072

Released	2014-05-28
Method	X-RAY DIFFRACTION 2.851 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Crossover junction endonuclease EME1 (protein) Crossover junction endonuclease MUS81 (protein) DNA GAATGTGTGTCTCAATC (nucleic acid) DNA GGATTG (nucleic acid) DNA TAACCAGACACACATT (nucleic acid)

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4P0R	Download File View File

human Mus81-Eme1-3'flap DNA complex

Gwon, G.H., Baek, K., Cho, Y.

(2014) EMBO J 33: 1061-1072

Released	2014-05-28
Method	X-RAY DIFFRACTION 6.501 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Crossover junction endonuclease EME1 (protein) Crossover junction endonuclease MUS81 (protein) DNA ACGTGCTTACACACAGAGGTTAGGGTGAACTT (nucleic acid) DNA CAAGTTCACCCTAACCTCAG (nucleic acid) DNA CTGTGTGTAAGCACG (nucleic acid)

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4P0S	Download File View File

human Mus81-Eme1-3'flap DNA complex

Gwon, G.H., Baek, K., Cho, Y.

(2014) EMBO J 33: 1061-1072

Released	2014-05-28
Method	X-RAY DIFFRACTION 6 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Crossover junction endonuclease EME1 (protein) Crossover junction endonuclease MUS81 (protein) DNA GAATGTGTGTCT (nucleic acid) DNA TAGACACACATTCGGGACATGCAG (nucleic acid) DNA TCTGCATGTCATT (nucleic acid)

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4R3Z	Download File View File

Crystal structure of human ArgRS-GlnRS-AIMP1 complex

Fu, Y., Kim, Y., Cho, Y.

(2014) Proc Natl Acad Sci U S A 111: 15084-15089

Released	2014-10-08
Method	X-RAY DIFFRACTION 4.033 Å
Organisms	Homo sapiens
Macromolecule	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 (protein) Arginine--tRNA ligase, cytoplasmic (protein) Glutamine--tRNA ligase (protein)

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5ER7	Download File View File

Connexin-26 Bound to Calcium

Purdy, M.D., Bennett, B.C., Baker, K.A., Yeager, M.J.

(2016) Nat Commun 7: 8770-8770

Released	2016-01-27
Method	X-RAY DIFFRACTION 3.286 Å
Organisms	Homo sapiens
Macromolecule	Gap junction beta-2 protein (protein)
Unique Ligands	CA

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5ERA	Download File View File

Human Connexin-26 (Calcium-free)

Purdy, M.D., Bennett, B.C., Baker, K.A., Yeager, M.J.

(2016) Nat Commun 7: 8770-8770

Released	2016-01-27
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Homo sapiens
Macromolecule	Gap junction beta-2 protein (protein)

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5I2K	Download File View File

Structure of the human GluN1/GluN2A LBD in complex with 7-{[ethyl(4-fluorophenyl)amino]methyl}-N,2-dimethyl-5-oxo-5H-[1,3]thiazolo[3,2-a]pyrimidine-3-carboxamide (compound 19)

Wallweber, H.J.A., Lupardus, P.J.

(2016) J Med Chem 59: 2760-2779

Released	2016-03-16
Method	X-RAY DIFFRACTION 2.86 Å
Organisms	Homo sapiens
Macromolecule	Glutamate receptor ionotropic, NMDA 1 (protein) Glutamate receptor ionotropic, NMDA 2A (protein)
Unique Ligands	67H, GLU, GLY

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5I2N	Download File View File

Structure of the human GluN1/GluN2A LBD in complex with N-ethyl-7-{[2-fluoro-3-(trifluoromethyl)phenyl]methyl}-2-methyl-5-oxo-5H-[1,3]thiazolo[3,2-a]pyrimidine-3-carboxamide (compound 29)

Wallweber, H.J.A., Lupardus, P.J.

(2016) J Med Chem 59: 2760-2779

Released	2016-03-16
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Homo sapiens
Macromolecule	Glutamate receptor ionotropic, NMDA 1 (protein) Glutamate receptor ionotropic, NMDA 2A (protein)
Unique Ligands	67J, CA, EPE, GLU, GLY