1NIJ

YJIA PROTEIN

PDB DOI: https://doi.org/10.2210/pdb1NIJ/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Escherichia coli
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2002-12-24 Released: 2003-06-24
Deposition Author(s): Khil, P.P., Obmolova, G., Teplyakov, A., Howard, A.J., Gilliland, G.L., Camerini-Otero, R.D., Structure 2 Function Project (S2F)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Work:
0.223 (Depositor), 0.220 (DCC)
R-Value Observed:
0.223 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of the Escherichia coli YjiA protein suggests a GTP-dependent regulatory function.

Khil, P.P., Obmolova, G., Teplyakov, A., Howard, A.J., Gilliland, G.L., Camerini-Otero, R.D.

(2004) Proteins 54: 371-374

PubMed: 14696199 Search on PubMed
DOI: https://doi.org/10.1002/prot.10430
Primary Citation of Related Structures:
1NIJ

Organizational Affiliation

Genetics and Biochemistry Branch, NIDDK, National Institutes of Health, Bethesda, Maryland 20892, USA. pk94j@nih.gov

Macromolecule Content

Total Structure Weight: 35.7 kDa
Atom Count: 2,666
Modelled Residue Count: 317
Deposited Residue Count: 318
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein yjiA	A	318	Escherichia coli	Mutation(s): 0 Gene Names: YJIA OR B4352 EC: 3.6.5
UniProt
Find proteins for P24203 (Escherichia coli (strain K12)) Explore P24203 Go to UniProtKB: P24203
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P24203
Sequence Annotations Expand
Reference Sequence LOADING

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Work: 0.223 (Depositor), 0.220 (DCC)
R-Value Observed: 0.223 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.83	α = 90
b = 66.52	β = 114.96
c = 56.15	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
MLPHARE	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2003-06-24

Deposition Author(s):

Gilliland, G.L.

Camerini-Otero, R.D.

Structure 2 Function Project (S2F)

Revision History (Full details and data files)

Version 1.0: 2003-06-24
Type: Initial release
Version 1.1: 2008-04-29
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2017-10-25
Changes: Author supporting evidence
Version 1.4: 2024-02-14
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.