1Y80

Structure of a corrinoid (factor IIIm)-binding protein from Moorella thermoacetica


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 
    0.210 (Depositor), 0.220 (DCC) 
  • R-Value Work: 
    0.174 (Depositor), 0.180 (DCC) 
  • R-Value Observed: 
    0.176 (Depositor) 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted B1MClick on this verticalbar to view details

This is version 1.5 of the entry. See complete history


Literature

Structure of a corrinoid (factor IIIm)-binding protein from Moorella thermoacetica

Liu, Z.-J.Fu, Z.-Q.Tempel, W.Das, A.Habel, J.Zhou, W.Chang, J.Chen, L.Lee, D.Nguyen, D.Chang, S.-H.Ljungdahl, L.Rose, J.P.Wang, B.-C.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Predicted cobalamin binding protein210Moorella thermoaceticaMutation(s): 0 
EC: 2.1.1.13
UniProt
Find proteins for Q2RJ67 (Moorella thermoacetica (strain ATCC 39073 / JCM 9320))
Explore Q2RJ67 
Go to UniProtKB:  Q2RJ67
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ2RJ67
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free:  0.210 (Depositor), 0.220 (DCC) 
  • R-Value Work:  0.174 (Depositor), 0.180 (DCC) 
  • R-Value Observed: 0.176 (Depositor) 
Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 55.689α = 90
b = 62.738β = 90
c = 34.543γ = 90
Software Package:
Software NamePurpose
SOLVEphasing
RESOLVEphasing
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
MAR345data collection
SHELXDphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted B1MClick on this verticalbar to view details

Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2005-01-25
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2012-07-25
    Changes: Other
  • Version 1.4: 2017-10-11
    Changes: Refinement description
  • Version 1.5: 2024-02-14
    Changes: Data collection, Database references, Derived calculations