2YF0

Human Myotubularin related protein 6 (MTMR6)

• PDB DOI: https://doi.org/10.2210/pdb2YF0/pdb

• Classification: HYDROLASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2011-03-31 Released: 2011-04-13 
• Deposition Author(s): Moche, M., Tresaugues, L., Arrowsmith, C.H., Berglund, H., Bountra, C., Collins, R., Edwards, A.M., Flodin, S., Flores, A., Graslund, S., Hammarstrom, M., Johansson, I., Karlberg, T., Kotenyova, T., Kouznetsova, E., Nyman, T., Persson, C., Schuler, H., Schutz, P., Siponen, M.I., Thorsell, A.G., VanDenBerg, S., Wahlberg, E., Weigelt, J., Welin, M., Nordlund, P.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.65 Å
• R-Value Free: 
  0.288 (Depositor), 0.310 (DCC) 
• R-Value Work: 
  0.258 (Depositor), 0.280 (DCC) 
• R-Value Observed: 
  0.259 (Depositor) 

Starting Model: experimental

Literature

Crystal Structure of Human Mtmr6

Moche, M., Tresaugues, L., Arrowsmith, C.H., Berglund, H., Bountra, C., Collins, R., Edwards, A.M., Flodin, S., Flores, A., Graslund, S., Hammarstrom, M., Johansson, I., Karlberg, T., Kotenyova, T., Kouznetsova, E., Nyman, T., Persson, C., Schuler, H., Schutz, P., Siponen, M.I., Thorsell, A.G., Vandenberg, S., Wahlberg, E., Weigelt, J., Welin, M., Nordlund, P.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 59.79 kDa 
• Atom Count: 3,920 
• Modelled Residue Count: 487 
• Deposited Residue Count: 512 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MYOTUBULARIN-RELATED PROTEIN 6	A	512	Homo sapiens	Mutation(s): 0  EC: 3.1.3 (PDB Primary Data), 3.1.3.95 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y217 (Homo sapiens) Explore Q9Y217  Go to UniProtKB:  Q9Y217
PHAROS:  Q9Y217 GTEx:  ENSG00000139505

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	B [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.65 Å
• R-Value Free:  0.288 (Depositor), 0.310 (DCC) 
• R-Value Work:  0.258 (Depositor), 0.280 (DCC) 
• R-Value Observed: 0.259 (Depositor) 

Space Group: P 6₄ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 85.735	α = 90
b = 85.735	β = 90
c = 448.446	γ = 120

Software Package:

Software Name	Purpose
XDS	data reduction
SCALA	data scaling
SHARP	phasing
PHASER	phasing
BUSTER	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-04-13 
Deposition Author(s): Moche, M., Tresaugues, L., Arrowsmith, C.H., Berglund, H., Bountra, C., Collins, R., Edwards, A.M., Flodin, S., Flores, A., Graslund, S., Hammarstrom, M., Johansson, I., Karlberg, T., Kotenyova, T., Kouznetsova, E., Nyman, T., Persson, C., Schuler, H., Schutz, P., Siponen, M.I., Thorsell, A.G., VanDenBerg, S., Wahlberg, E., Weigelt, J., Welin, M., Nordlund, P.

Revision History  

• Version 1.0: 2011-04-13
  Type: Initial release
  
• Version 1.1: 2011-05-08
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2023-12-20
  Changes: Data collection, Database references, Derived calculations, Other, Refinement description