A domain of a conserved functionally known protein from Vibrio parahaemolyticus RIMD 2210633.
Tan, K., Tesar, C., Bearden, J., Joachimiak, A.To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
uncharacterized protein VP2912 | 130 | Vibrio parahaemolyticus | Mutation(s): 0 Gene Names: Vibrio parahaemolyticus, VP2912 | ![]() | |
UniProt | |||||
Find proteins for Q87KR4 (Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)) Explore Q87KR4 Go to UniProtKB: Q87KR4 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q87KR4 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
FMT Query on FMT | C [auth A], D [auth B] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 69.301 | α = 90 |
b = 69.301 | β = 90 |
c = 255.136 | γ = 120 |
Software Name | Purpose |
---|---|
SBC-Collect | data collection |
SHELXD | phasing |
MLPHARE | phasing |
DM | model building |
ARP | model building |
WARP | model building |
HKL-3000 | phasing |
PHENIX | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
DM | phasing |