4Q5F

Crystal Structure of the Glutathione S-transferase from Ascaris lumbricoides

PDB DOI: https://doi.org/10.2210/pdb4Q5F/pdb

Classification: TRANSFERASE
Organism(s): Ascaris suum
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2014-04-16 Released: 2015-04-01
Deposition Author(s): Pedersen, L.C., Mueller, G.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free:
0.239 (Depositor), 0.240 (DCC)
R-Value Work:
0.188 (Depositor), 0.190 (DCC)
R-Value Observed:
0.190 (Depositor)

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Crystal Structure of the Glutathione S-transferase from Ascaris lumbricoides

Pedersen, L.C., Mueller, G.A.

To be published.

Macromolecule Content

Total Structure Weight: 51.28 kDa
Atom Count: 3,443
Modelled Residue Count: 411
Deposited Residue Count: 436
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutathione S-transferase 1	A, B [auth D]	218	Ascaris suum	Mutation(s): 0 Gene Names: GST1 EC: 2.5.1.18
UniProt
Find proteins for P46436 (Ascaris suum) Explore P46436 Go to UniProtKB: P46436
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P46436
Sequence Annotations Expand
Reference Sequence LOADING

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GSH Query on GSH Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain E [auth D] SDF format, chain F [auth D] SDF format, chain D [auth A] MOL2 format, chain C [auth A] MOL2 format, chain E [auth D] MOL2 format, chain F [auth D] MOL2 format, chain D [auth A] mmCIF format, chain C [auth A] mmCIF format, chain E [auth D] mmCIF format, chain F [auth D] mmCIF format, chain D [auth A]	C [auth A], D [auth A], E [auth D], F [auth D]	GLUTATHIONE C₁₀ H₁₇ N₃ O₆ S RWSXRVCMGQZWBV-WDSKDSINSA-N		Interactions Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth D] Focus chain F [auth D] Interactions & Density Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth D] Focus chain F [auth D]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free: 0.239 (Depositor), 0.240 (DCC)
R-Value Work: 0.188 (Depositor), 0.190 (DCC)
R-Value Observed: 0.190 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 56.784	α = 90
b = 88.031	β = 90
c = 97.228	γ = 90

Software Package:

Software Name	Purpose
SERGUI	data collection
MLPHARE	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Ligand Structure Quality Assessment

Entry History

Deposition Data

Released Date: 2015-04-01

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2015-04-01
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.