5GOL

Structure of acetyl-Coenzyme A synthase Alpha subunit C-terminal domain F598H mutant

PDB DOI: https://doi.org/10.2210/pdb5GOL/pdb

Classification: TRANSFERASE
Organism(s): Moorella thermoacetica
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2016-07-27 Released: 2017-09-06
Deposition Author(s): Yuan, H., Wei, Y.Z., Tan, X.S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.11 Å
R-Value Free:
0.240 (Depositor), 0.241 (DCC)
R-Value Work:
0.203 (Depositor), 0.207 (DCC)
R-Value Observed:
0.205 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure of acetyl-Coenzyme A synthase Alpha subunit C-terminal domain F598H mutant

Yuan, H., Wei, Y.Z., Tan, X.S.

To be published.

Macromolecule Content

Total Structure Weight: 59 kDa
Atom Count: 4,396
Modelled Residue Count: 540
Deposited Residue Count: 540
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Carbon monoxide dehydrogenase/acetyl-CoA synthase subunit alpha	A, B, C, D	135	Moorella thermoacetica	Mutation(s): 1 EC: 2.3.1.169
UniProt
Find proteins for P27988 (Moorella thermoacetica) Explore P27988 Go to UniProtKB: P27988
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P27988
Sequence Annotations Expand
Reference Sequence LOADING

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain J [auth B] SDF format, chain K [auth C] SDF format, chain L [auth D] MOL2 format, chain E [auth A] MOL2 format, chain J [auth B] MOL2 format, chain K [auth C] MOL2 format, chain L [auth D] mmCIF format, chain E [auth A] mmCIF format, chain J [auth B] mmCIF format, chain K [auth C] mmCIF format, chain L [auth D]	E [auth A], J [auth B], K [auth C], L [auth D]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain E [auth A] Focus chain J [auth B] Focus chain K [auth C] Focus chain L [auth D] Interactions & Density Focus chain E [auth A] Focus chain J [auth B] Focus chain K [auth C] Focus chain L [auth D]
NI Query on NI Download Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain G [auth A] SDF format, chain H [auth B] SDF format, chain I [auth B] MOL2 format, chain F [auth A] MOL2 format, chain G [auth A] MOL2 format, chain H [auth B] MOL2 format, chain I [auth B] mmCIF format, chain F [auth A] mmCIF format, chain G [auth A] mmCIF format, chain H [auth B] mmCIF format, chain I [auth B]	F [auth A], G [auth A], H [auth B], I [auth B]	NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N		Interactions Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth B] Focus chain I [auth B] Interactions & Density Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth B] Focus chain I [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.11 Å
R-Value Free: 0.240 (Depositor), 0.241 (DCC)
R-Value Work: 0.203 (Depositor), 0.207 (DCC)
R-Value Observed: 0.205 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 86.839	α = 90
b = 58.569	β = 102.83
c = 120.729	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2017-09-06

Deposition Author(s):

Yuan, H.

Wei, Y.Z.

Tan, X.S.

Revision History (Full details and data files)

Version 1.0: 2017-09-06
Type: Initial release
Version 1.1: 2024-11-13
Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary