5HHA

Structure of PvdO from Pseudomonas aeruginosa

• PDB DOI: https://doi.org/10.2210/pdb5HHA/pdb

• Classification: HYDROLASE
• Organism(s): Pseudomonas aeruginosa PAO1
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2016-01-10 Released: 2017-01-18 
• Deposition Author(s): Bai, G., Yuan, Z., Shang, G., Xia, H., Gu, L.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.24 Å
• R-Value Free: 
  0.165 (Depositor), 0.161 (DCC) 
• R-Value Work: 
  0.150 (Depositor), 0.147 (DCC) 
• R-Value Observed: 
  0.151 (Depositor) 

Literature

Crystal structure of Chromophore maturation protein from Pseudomonas aeruginosa

Yuan, Z., Shang, G., Bai, G., Xia, H., Gu, L.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 63.33 kDa 
• Atom Count: 5,183 
• Modelled Residue Count: 533 
• Deposited Residue Count: 572 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PvdO	A, B	286	Pseudomonas aeruginosa PAO1	Mutation(s): 0  Gene Names: pvdO, PA2395
UniProt
Find proteins for Q9I185 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q9I185  Go to UniProtKB:  Q9I185

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CA	C [auth A], D [auth B]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.24 Å
• R-Value Free:  0.165 (Depositor), 0.161 (DCC) 
• R-Value Work:  0.150 (Depositor), 0.147 (DCC) 
• R-Value Observed: 0.151 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 56.978	α = 90
b = 78.924	β = 93.89
c = 58.205	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-01-18 
Deposition Author(s): Bai, G., Yuan, Z., Shang, G., Xia, H., Gu, L.

Revision History  

• Version 1.0: 2017-01-18
  Type: Initial release
  
• Version 1.1: 2017-01-25
  Changes: Structure summary
• Version 1.2: 2024-11-20
  Changes: Data collection, Database references, Derived calculations, Structure summary