5O9C

Crystal structure of Omp36 from Enterobacter aerogenes

PDB DOI: https://doi.org/10.2210/pdb5O9C/pdb

Classification: MEMBRANE PROTEIN
Organism(s): Klebsiella aerogenes
Expression System: Escherichia coli BL21
Mutation(s): No
Membrane Protein: Yes OPMPDBTMMemProtMDmpstruc

Deposited: 2017-06-17 Released: 2018-06-27
Deposition Author(s): Ferrara, L., Naismith, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.47 Å
R-Value Free:
0.239 (Depositor), 0.240 (DCC)
R-Value Work:
0.193 (Depositor), 0.190 (DCC)
R-Value Observed:
0.196 (Depositor)

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of Omp36 from Enterobacter aerogenes

Ferrara, L., Naismith, J.

To be published.

Macromolecule Content

Total Structure Weight: 158.54 kDa
Atom Count: 11,093
Modelled Residue Count: 1,392
Deposited Residue Count: 1,416
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Osmoporin Omp36	A [auth C], B [auth A], C [auth D], D [auth B]	354	Klebsiella aerogenes	Mutation(s): 0 Gene Names: omp36 Membrane Entity: Yes
UniProt
Find proteins for Q9ALY0 (Klebsiella aerogenes) Explore Q9ALY0 Go to UniProtKB: Q9ALY0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9ALY0
Sequence Annotations Expand
Reference Sequence LOADING

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
C8E Query on C8E Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain F [auth D] SDF format, chain G [auth B] SDF format, chain H [auth B] MOL2 format, chain E [auth A] MOL2 format, chain F [auth D] MOL2 format, chain G [auth B] MOL2 format, chain H [auth B] mmCIF format, chain E [auth A] mmCIF format, chain F [auth D] mmCIF format, chain G [auth B] mmCIF format, chain H [auth B]	E [auth A], F [auth D], G [auth B], H [auth B]	(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE C₁₆ H₃₄ O₅ FEOZZFHAVXYAMB-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Focus chain F [auth D] Focus chain G [auth B] Focus chain H [auth B] Interactions & Density Focus chain E [auth A] Focus chain F [auth D] Focus chain G [auth B] Focus chain H [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.47 Å
R-Value Free: 0.239 (Depositor), 0.240 (DCC)
R-Value Work: 0.193 (Depositor), 0.190 (DCC)
R-Value Observed: 0.196 (Depositor)

Space Group: P 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 125.098	α = 90
b = 125.098	β = 90
c = 126.542	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
SCALA	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Ligand Structure Quality Assessment

Entry History

Deposition Data

Released Date: 2018-06-27

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2018-06-27
Type: Initial release
Version 1.1: 2019-10-16
Changes: Data collection
Version 1.2: 2024-05-08
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.