Dimeric and high-resolution structures of Chlamydomonas Photosystem I from a temperature-sensitive Photosystem II mutant
Caspy, I., Schwartz, T., Bayro-Kaiser, V., Fadeeva, M., Kessel, A., Ben-Tal, N., Nelson, N.(2021) Commun Biol 4: 1380
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
(2021) Commun Biol 4: 1380
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I P700 chlorophyll a apoprotein A1 | 741 | Chlamydomonas reinhardtii | Mutation(s): 0 EC: 1.97.1.12 Membrane Entity: Yes | ![]() | |
UniProt | |||||
Find proteins for P12154 (Chlamydomonas reinhardtii) Explore P12154 Go to UniProtKB: P12154 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P12154 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I P700 chlorophyll a apoprotein A2 | 733 | Chlamydomonas reinhardtii | Mutation(s): 0 EC: 1.97.1.12 Membrane Entity: Yes | ![]() | |
UniProt | |||||
Find proteins for P09144 (Chlamydomonas reinhardtii) Explore P09144 Go to UniProtKB: P09144 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P09144 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I iron-sulfur center | 80 | Chlamydomonas reinhardtii | Mutation(s): 0 EC: 1.97.1.12 Membrane Entity: Yes | ![]() | |
UniProt | |||||
Find proteins for Q00914 (Chlamydomonas reinhardtii) Explore Q00914 Go to UniProtKB: Q00914 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q00914 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit II, chloroplastic | 144 | Chlamydomonas reinhardtii | Mutation(s): 0 Membrane Entity: Yes | ![]() | |
UniProt | |||||
Find proteins for Q39615 (Chlamydomonas reinhardtii) Explore Q39615 Go to UniProtKB: Q39615 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q39615 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit IV, chloroplastic | 63 | Chlamydomonas reinhardtii | Mutation(s): 0 Membrane Entity: Yes | ![]() | |
UniProt | |||||
Find proteins for P12352 (Chlamydomonas reinhardtii) Explore P12352 Go to UniProtKB: P12352 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P12352 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit III, chloroplastic | 165 | Chlamydomonas reinhardtii | Mutation(s): 0 Membrane Entity: Yes | ![]() | |
UniProt | |||||
Find proteins for P12356 (Chlamydomonas reinhardtii) Explore P12356 Go to UniProtKB: P12356 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P12356 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit V, chloroplastic | 91 | Chlamydomonas reinhardtii | Mutation(s): 0 Membrane Entity: Yes | ![]() | |
UniProt | |||||
Find proteins for P14224 (Chlamydomonas reinhardtii) Explore P14224 Go to UniProtKB: P14224 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P14224 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit VIII | H [auth I] | 37 | Chlamydomonas reinhardtii | Mutation(s): 0 Membrane Entity: Yes | ![]() |
UniProt | |||||
Find proteins for A8IFG7 (Chlamydomonas reinhardtii) Explore A8IFG7 Go to UniProtKB: A8IFG7 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A8IFG7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit IX | I [auth J] | 39 | Chlamydomonas reinhardtii | Mutation(s): 0 Membrane Entity: Yes | ![]() |
UniProt | |||||
Find proteins for P59777 (Chlamydomonas reinhardtii) Explore P59777 Go to UniProtKB: P59777 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P59777 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit psaK, chloroplastic | J [auth K] | 84 | Chlamydomonas reinhardtii | Mutation(s): 0 Membrane Entity: Yes | ![]() |
UniProt | |||||
Find proteins for P14225 (Chlamydomonas reinhardtii) Explore P14225 Go to UniProtKB: P14225 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P14225 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
PSI subunit V | K [auth L] | 126 | Chlamydomonas reinhardtii | Mutation(s): 0 Membrane Entity: Yes | ![]() |
UniProt | |||||
Find proteins for A8IL32 (Chlamydomonas reinhardtii) Explore A8IL32 Go to UniProtKB: A8IL32 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A8IL32 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 12 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Chlorophyll a-b binding protein, chloroplastic | L [auth 1], M [auth Z] | 194 | Chlamydomonas reinhardtii | Mutation(s): 0 | ![]() |
UniProt | |||||
Find proteins for Q05093 (Chlamydomonas reinhardtii) Explore Q05093 Go to UniProtKB: Q05093 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q05093 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 13 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Chlorophyll a-b binding protein, chloroplastic | N [auth 3] | 219 | Chlamydomonas reinhardtii | Mutation(s): 0 | ![]() |
UniProt | |||||
Find proteins for Q75VY9 (Chlamydomonas reinhardtii) Explore Q75VY9 Go to UniProtKB: Q75VY9 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q75VY9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 14 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Chlorophyll a-b binding protein, chloroplastic | O [auth 7] | 213 | Chlamydomonas reinhardtii | Mutation(s): 0 | ![]() |
UniProt | |||||
Find proteins for Q84Y02 (Chlamydomonas reinhardtii) Explore Q84Y02 Go to UniProtKB: Q84Y02 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q84Y02 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 15 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Chlorophyll a-b binding protein, chloroplastic | P [auth 8] | 217 | Chlamydomonas reinhardtii | Mutation(s): 0 | ![]() |
UniProt | |||||
Find proteins for Q75VY7 (Chlamydomonas reinhardtii) Explore Q75VY7 Go to UniProtKB: Q75VY7 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q75VY7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 16 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Chlorophyll a-b binding protein, chloroplastic | Q [auth 4] | 210 | Chlamydomonas reinhardtii | Mutation(s): 0 Membrane Entity: Yes | ![]() |
UniProt | |||||
Find proteins for Q75VZ0 (Chlamydomonas reinhardtii) Explore Q75VZ0 Go to UniProtKB: Q75VZ0 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q75VZ0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 17 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Chlorophyll a-b binding protein, chloroplastic | R [auth 5] | 227 | Chlamydomonas reinhardtii | Mutation(s): 0 | ![]() |
UniProt | |||||
Find proteins for Q75VY8 (Chlamydomonas reinhardtii) Explore Q75VY8 Go to UniProtKB: Q75VY8 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q75VY8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 18 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Chlorophyll a-b binding protein, chloroplastic | S [auth 6] | 229 | Chlamydomonas reinhardtii | Mutation(s): 0 | ![]() |
UniProt | |||||
Find proteins for Q75VY6 (Chlamydomonas reinhardtii) Explore Q75VY6 Go to UniProtKB: Q75VY6 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q75VY6 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 24 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
DGD Query on DGD | ZD [auth B] | DIGALACTOSYL DIACYL GLYCEROL (DGDG) C51 H96 O15 LDQFLSUQYHBXSX-HXXRYREZSA-N | |||
CHL Query on CHL | BI [auth 7] CJ [auth 8] HH [auth 3] LG [auth Z] OG [auth Z] | CHLOROPHYLL B C55 H70 Mg N4 O6 MWVCRINOIIOUAU-UYSPMESUSA-M | |||
CLA Query on CLA | AA [auth A] AB [auth A] AC [auth B] AD [auth B] AH [auth 3] | CHLOROPHYLL A C55 H72 Mg N4 O5 ATNHDLDRLWWWCB-AENOIHSZSA-M | |||
CL0 Query on CL0 | T [auth A] | CHLOROPHYLL A ISOMER C55 H72 Mg N4 O5 VIQFHHZSLDFWDU-DVXFRRMCSA-M | |||
SQD Query on SQD | YF [auth 1] | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL C41 H78 O12 S RVUUQPKXGDTQPG-JUDHQOGESA-N | |||
LMG Query on LMG | TE [auth J], YB [auth A] | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE C45 H86 O10 DCLTVZLYPPIIID-CVELTQQQSA-N | |||
LHG Query on LHG | AL [auth 5] BE [auth B] CK [auth 4] EJ [auth 8] EL [auth 6] | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE C38 H75 O10 P BIABMEZBCHDPBV-MPQUPPDSSA-N | |||
3PH Query on 3PH | DK [auth 5], NI [auth 8], PH [auth 7], XL [auth 6] | 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE C39 H77 O8 P YFWHNAWEOZTIPI-DIPNUNPCSA-N | |||
DGA Query on DGA | ZB [auth A] | DIACYL GLYCEROL C39 H76 O5 UHUSDOQQWJGJQS-QNGWXLTQSA-N | |||
LUT Query on LUT | AG [auth Z] BG [auth Z] EK [auth 5] FF [auth 1] FK [auth 5] | (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL C40 H56 O2 KBPHJBAIARWVSC-NSIPBSJQSA-N | |||
C7Z Query on C7Z | HF [auth 1], IK [auth 5], SE [auth J] | (1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol C40 H56 O2 JKQXZKUSFCKOGQ-ANDPMPNWSA-N | |||
RRX Query on RRX | JE [auth F] | (3R)-beta,beta-caroten-3-ol C40 H56 O DMASLKHVQRHNES-FKKUPVFPSA-N | |||
BCR Query on BCR | BF [auth L] BL [auth 6] EE [auth B] EF [auth L] GK [auth 5] | BETA-CAROTENE C40 H56 OENHQHLEOONYIE-JLTXGRSLSA-N | |||
LMT Query on LMT | AE [auth B] AK [auth 4] DE [auth B] HJ [auth 8] KE [auth F] | DODECYL-BETA-D-MALTOSIDE C24 H46 O11 NLEBIOOXCVAHBD-QKMCSOCLSA-N | |||
LPX Query on LPX | GJ [auth 8] | (2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate C21 H44 N O7 P YVYMBNSKXOXSKW-FQEVSTJZSA-N | |||
PQN Query on PQN | HB [auth A], QD [auth B] | PHYLLOQUINONE C31 H46 O2 MBWXNTAXLNYFJB-NKFFZRIASA-N | |||
NKP Query on NKP | FJ [auth 8], MH [auth 3], QB [auth A] | (2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate C21 H41 O7 P WRGQSWVCFNIUNZ-SQUSKLHYSA-N | |||
SF4 Query on SF4 | GE [auth C], HE [auth C], IB [auth A] | IRON/SULFUR CLUSTER Fe4 S4 LJBDFODJNLIPKO-UHFFFAOYSA-N | |||
SPH Query on SPH | AF [auth K], HI [auth 7], KI [auth 7] | SPHINGOSINE C18 H37 N O2 WWUZIQQURGPMPG-MSOLQXFVSA-N | |||
QTB Query on QTB | CG [auth Z] | (3~{E},5~{E},7~{E})-6-methyl-8-[(6~{R})-2,2,6-trimethylcyclohexyl]octa-3,5,7-trien-2-one C18 H28 O WXNCHUZBWWHNPM-FHRFKLSGSA-N | |||
PLM Query on PLM | II [auth 7] | PALMITIC ACID C16 H32 O2 IPCSVZSSVZVIGE-UHFFFAOYSA-N | |||
DAO Query on DAO | XB [auth A] | LAURIC ACID C12 H24 O2 POULHZVOKOAJMA-UHFFFAOYSA-N | |||
OCA Query on OCA | SB [auth A] | OCTANOIC ACID (CAPRYLIC ACID) C8 H16 O2 WWZKQHOCKIZLMA-UHFFFAOYSA-N | |||
CA Query on CA | CE [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
SNC Query on SNC | D | L-PEPTIDE LINKING | C3 H6 N2 O3 S | CYS |
Task | Software Package | Version |
---|---|---|
MODEL REFINEMENT | PHENIX | |
RECONSTRUCTION | RELION | 3.0.7 |
Funding Organization | Location | Grant Number |
---|---|---|
Israel Science Foundation | Israel | 569/17 |
German-Israeli Foundation for Research and Development | Israel | G-1483-207/2018 |