7CWH

Structural basis of RACK7 PHD to read a pediatric glioblastoma-associated histone mutation H3.3G34R

• PDB DOI: https://doi.org/10.2210/pdb7CWH/pdb

• Classification: TRANSCRIPTION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2020-08-28 Released: 2021-05-26 
• Deposition Author(s): Lan, W.X., Li, Z., Jiao, F.F., Wang, C.X., Guo, R., Cao, C.Y.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

Structural basis of RACK7 PHD domain to read a pediatric glioblastoma‐associated histone mutation H3.3G34R

Lan, W.X., Li, Z., Jiao, F.F., Wang, C.X., Guo, R., Cao, C.Y.

(2021) Chin J Chem 

• DOI: https://doi.org/10.1002/cjoc.202100277

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: native gel electrophoresis

Macromolecule Content

• Total Structure Weight: 8.6 kDa 
• Atom Count: 590 
• Modelled Residue Count: 72 
• Deposited Residue Count: 72 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Peptide from Histone H3.3	A	11	Homo sapiens	Mutation(s): 1
UniProt & NIH Common Fund Data Resources
Find proteins for P84243 (Homo sapiens) Explore P84243  Go to UniProtKB:  P84243
PHAROS:  P84243 GTEx:  ENSG00000132475 ENSG00000163041

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein kinase C-binding protein 1	B	61	Homo sapiens	Mutation(s): 0  Gene Names: ZMYND8
UniProt & NIH Common Fund Data Resources
Find proteins for Q9ULU4 (Homo sapiens) Explore Q9ULU4  Go to UniProtKB:  Q9ULU4
PHAROS:  Q9ULU4 GTEx:  ENSG00000101040

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN (Subject of Investigation/LOI)	C [auth B], D [auth B]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2021-05-26 
Deposition Author(s): Lan, W.X., Li, Z., Jiao, F.F., Wang, C.X., Guo, R., Cao, C.Y.

Revision History  

• Version 1.0: 2021-05-26
  Type: Initial release
  
• Version 1.1: 2024-05-01
  Changes: Data collection, Database references