8C9N

MiniCoV-ADDomer, a SARS-CoV-2 epitope presenting viral like particle


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.36 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

In vitro generated antibodies guide thermostable ADDomer nanoparticle design for nasal vaccination and passive immunization against SARS-CoV-2.

Buzas, D.Bunzel, A.H.Staufer, O.Milodowski, E.J.Edmunds, G.L.Bufton, J.C.Vidana Mateo, B.V.Yadav, S.K.N.Gupta, K.Fletcher, C.Williamson, M.K.Harrison, A.Borucu, U.Capin, J.Francis, O.Balchin, G.Hall, S.Vega, M.V.Durbesson, F.Lingappa, S.Vincentelli, R.Roe, J.Wooldridge, L.Burt, R.Anderson, R.J.L.Mulholland, A.J.Hare, J.Bailey, M.Davidson, A.D.Finn, A.Morgan, D.Mann, J.Spatz, J.Garzoni, F.Schaffitzel, C.Berger, I.

(2023) Antib Ther 6: 277-297

  • DOI: https://doi.org/10.1093/abt/tbad024
  • Primary Citation of Related Structures:  
    8C9N

  • PubMed Abstract: 

    Due to COVID-19, pandemic preparedness emerges as a key imperative, necessitating new approaches to accelerate development of reagents against infectious pathogens. Here, we developed an integrated approach combining synthetic, computational and structural methods with in vitro antibody selection and in vivo immunization to design, produce and validate nature-inspired nanoparticle-based reagents against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Our approach resulted in two innovations: (i) a thermostable nasal vaccine called ADDoCoV, displaying multiple copies of a SARS-CoV-2 receptor binding motif derived epitope and (ii) a multivalent nanoparticle superbinder, called Gigabody, against SARS-CoV-2 including immune-evasive variants of concern (VOCs). In vitro generated neutralizing nanobodies and electron cryo-microscopy established authenticity and accessibility of epitopes displayed by ADDoCoV. Gigabody comprising multimerized nanobodies prevented SARS-CoV-2 virion attachment with picomolar EC 50 . Vaccinating mice resulted in antibodies cross-reacting with VOCs including Delta and Omicron. Our study elucidates Adenovirus-derived dodecamer (ADDomer)-based nanoparticles for use in active and passive immunization and provides a blueprint for crafting reagents to combat respiratory viral infections.


  • Organizational Affiliation

    Max Planck Bristol Centre for Minimal Biology, University of Bristol, Bristol BS8 1TS, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Penton protein587Human adenovirus B3Mutation(s): 0 
Gene Names: L2
UniProt
Find proteins for Q2Y0H9 (Human adenovirus B serotype 3)
Explore Q2Y0H9 
Go to UniProtKB:  Q2Y0H9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ2Y0H9
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.36 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.12-2829-000
RECONSTRUCTIONRELION3.1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Engineering and Physical Sciences Research CouncilUnited KingdomEP/R511663/1
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/L01386X/1
Wellcome TrustUnited Kingdom202904/Z/16/Z
Wellcome TrustUnited Kingdom206181/Z/17/Z
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/R000484/1
Engineering and Physical Sciences Research CouncilUnited KingdomEP/R013764/1
Wellcome TrustUnited Kingdom210701/Z/18/Z
Wellcome TrustUnited Kingdom106115/Z/14/Z

Revision History  (Full details and data files)

  • Version 1.0: 2023-12-06
    Type: Initial release
  • Version 1.1: 2023-12-20
    Changes: Database references