8JZB

Langya Henipavirus attachment protein

PDB DOI: https://doi.org/10.2210/pdb8JZB/pdb
EM Map EMD-36741: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Henipavirus
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2023-07-05 Released: 2024-04-17
Deposition Author(s): Yan, R.H., Guo, Y.Y.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.76 Å
Aggregation State: CELL
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

A special homotetrameric architecture of langya virus glycoprotein

Yan, R.H., Guo, Y.Y.

To be published.

Macromolecule Content

Total Structure Weight: 278.31 kDa
Atom Count: 16,660
Modelled Residue Count: 2,120
Deposited Residue Count: 2,496
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
langya virus attachment protein G	A [auth B], B [auth D], C [auth F], D [auth H]	624	Henipavirus	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Glycosylation
Glycosylation Sites: 1	Glycosylation Focus chain A [auth B] Focus chain B [auth D] Focus chain C [auth F] Focus chain D [auth H]
Sequence Annotations Expand
Reference Sequence LOADING

Oligosaccharides

Help

Entity ID: 2
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	E [auth A], F [auth C], G [auth E], H [auth G]	2		N-Glycosylation	Interactions Focus chain E [auth A] Focus chain F [auth C] Focus chain G [auth E] Focus chain H [auth G] Interactions & Density Focus chain E [auth A] Focus chain F [auth C] Focus chain G [auth E] Focus chain H [auth G]
Glycosylation Resources
GlyTouCan: G42666HT GlyCosmos: G42666HT GlyGen: G42666HT

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG (Subject of Investigation/LOI) Query on NAG Download Ideal Coordinates CCD File SDF format, chain I [auth B] MOL2 format, chain I [auth B] mmCIF format, chain I [auth B]	I [auth B]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain I [auth B] Interactions & Density Focus chain I [auth B]
NA (Subject of Investigation/LOI) Query on NA Download Ideal Coordinates CCD File SDF format, chain J [auth B] SDF format, chain K [auth B] SDF format, chain L [auth D] SDF format, chain M [auth D] SDF format, chain N [auth F] SDF format, chain O [auth H] MOL2 format, chain J [auth B] MOL2 format, chain K [auth B] MOL2 format, chain L [auth D] MOL2 format, chain M [auth D] MOL2 format, chain N [auth F] MOL2 format, chain O [auth H] mmCIF format, chain J [auth B] mmCIF format, chain K [auth B] mmCIF format, chain L [auth D] mmCIF format, chain M [auth D] mmCIF format, chain N [auth F] mmCIF format, chain O [auth H]	J [auth B] K [auth B] L [auth D] M [auth D] N [auth F] J [auth B], K [auth B], L [auth D], M [auth D], N [auth F], O [auth H]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Interactions Focus chain J [auth B] Focus chain K [auth B] Focus chain L [auth D] Focus chain M [auth D] Focus chain N [auth F] Focus chain O [auth H] Interactions & Density Focus chain J [auth B] Focus chain K [auth B] Focus chain L [auth D] Focus chain M [auth D] Focus chain N [auth F] Focus chain O [auth H]