8K80

Crystal structure of Langya Virus attachment (G) glycoprotein

PDB DOI: https://doi.org/10.2210/pdb8K80/pdb

Classification: VIRAL PROTEIN
Organism(s): Langya virus
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2023-07-28 Released: 2023-09-13
Deposition Author(s): Li, Y.H., Huang, X.Y., Xu, J.J.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.37 Å
R-Value Free:
0.249 (Depositor), 0.250 (DCC)
R-Value Work:
0.198 (Depositor), 0.200 (DCC)
R-Value Observed:
0.201 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Langya Virus attachment (G) glycoprotein

Li, Y.H., Huang, X.Y., Xu, J.J.

To be published.

Macromolecule Content

Total Structure Weight: 144.46 kDa
Atom Count: 10,116
Modelled Residue Count: 1,299
Deposited Residue Count: 1,302
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Langya Virus attachment glycoprotein	A, B, C	434	Langya virus	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence LOADING

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.37 Å
R-Value Free: 0.249 (Depositor), 0.250 (DCC)
R-Value Work: 0.198 (Depositor), 0.200 (DCC)
R-Value Observed: 0.201 (Depositor)

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 110.01	α = 90
b = 110.01	β = 90
c = 331.11	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data scaling
XDS	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-09-13

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32200762

Revision History (Full details and data files)

Version 1.0: 2023-09-13
Type: Initial release
Version 1.1: 2024-11-13
Changes: Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.