8ZEX

Biosensor HaloKbp1a


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.66 Å
  • R-Value Free: 
    0.204 (Depositor), 0.204 (DCC) 
  • R-Value Work: 
    0.183 (Depositor), 0.183 (DCC) 
  • R-Value Observed: 
    0.184 (Depositor) 

Starting Model: experimental
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This is version 1.1 of the entry. See complete history


Literature

High-Performance Chemigenetic Potassium Ion Indicator.

Cheng, D.Ouyang, Z.He, X.Nasu, Y.Wen, Y.Terai, T.Campbell, R.E.

(2024) J Am Chem Soc 146: 35117-35128

  • DOI: https://doi.org/10.1021/jacs.4c10917
  • Primary Citation of Related Structures:  
    8ZEX

  • PubMed Abstract: 

    Potassium ion (K + ) is the most abundant metal ion in cells and plays an indispensable role in practically all biological systems. Although there have been reports of both synthetic and genetically encoded fluorescent K + indicators, there remains a need for an indicator that is genetically targetable, has high specificity for K + versus Na + , and has a high fluorescent response in the red to far-red wavelength range. Here, we introduce a series of chemigenetic K + indicators, designated as the HaloKbp1 series, based on the bacterial K + -binding protein (Kbp) inserted into HaloTag7 self-labeled with environmentally sensitive rhodamine derivatives. This series of high-performance indicators features high brightness in the red to far-red region, large intensiometric fluorescence changes, and a range of K d values. We demonstrate that they are suitable for the detection of physiologically relevant K + concentration changes such as those that result from the Ca 2+ -dependent activation of the BK potassium channel.


  • Organizational Affiliation

    Department of Chemistry, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
HaloKbp1a484Escherichia coliMutation(s): 0 
UniProt
Find proteins for P0ADE6 (Escherichia coli (strain K12))
Explore P0ADE6 
Go to UniProtKB:  P0ADE6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0ADE6
Sequence Annotations
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  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.66 Å
  • R-Value Free:  0.204 (Depositor), 0.204 (DCC) 
  • R-Value Work:  0.183 (Depositor), 0.183 (DCC) 
  • R-Value Observed: 0.184 (Depositor) 
Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 44.59α = 94
b = 50.28β = 101.32
c = 58.83γ = 99.97
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
MOLREPphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2024-12-18
    Type: Initial release
  • Version 1.1: 2025-01-08
    Changes: Database references