9JX5

Solution NMR structure of the 1:1 complex of NOP56 intronic G-quadruplex bound with pyridostatin

  • Classification: DNA
  • Organism(s): Homo sapiens
  • Mutation(s): No 

  • Deposited: 2024-10-11 Released: 2025-02-05 
  • Deposition Author(s): Yan, Z., Wan, L., Guo, P., Han, D.
  • Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 500 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Structural Insights into an Antiparallel Chair-Type G-Quadruplex from the Intron of NOP56 Oncogene

Yan, Z., Wan, L., Guo, P., Han, D.

To be published.

Macromolecules

Find similar nucleic acids by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains LengthOrganismImage
DNA (5'-D(*GP*GP*GP*CP*CP*TP*GP*GP*GP*CP*CP*TP*GP*GP*GP*CP*CP*TP*GP*GP*G)-3')21Homo sapiens
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
7V8 (Subject of Investigation/LOI)
Query on 7V8
Download Ideal Coordinates CCD File 
B [auth A]4-(2-azanylethoxy)-N2,N6-bis[4-(2-azanylethoxy)quinolin-2-yl]pyridine-2,6-dicarboxamide
C31 H32 N8 O5
VGHSATQVJCTKEF-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 500 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

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Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China22004038

Revision History  (Full details and data files)

  • Version 1.0: 2025-02-05
    Type: Initial release