6ZQJ
Cryo-EM structure of trimeric prME spike of Spondweni virus
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Flavi_glycop_C | e6zqjA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Flavi_glycop_C | ECOD (1.6) |
A | Flavi_glycoprot | e6zqjA3 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Flavi_glycoprot | ECOD (1.6) |
A | flavi_E_stem | e6zqjA2 | A: alpha arrays | X: Transmembrane domain of envelope protein E (From Topology) | H: Transmembrane domain of envelope protein E (From Topology) | T: Transmembrane domain of envelope protein E | F: flavi_E_stem | ECOD (1.6) |
C [auth D] | Flavi_glycop_C | e6zqjD3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Flavi_glycop_C | ECOD (1.6) |
C [auth D] | Flavi_glycoprot | e6zqjD1 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Flavi_glycoprot | ECOD (1.6) |
C [auth D] | flavi_E_stem | e6zqjD2 | A: alpha arrays | X: Transmembrane domain of envelope protein E (From Topology) | H: Transmembrane domain of envelope protein E (From Topology) | T: Transmembrane domain of envelope protein E | F: flavi_E_stem | ECOD (1.6) |
E [auth G] | Flavi_glycop_C | e6zqjG1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Flavi_glycop_C | ECOD (1.6) |
E [auth G] | Flavi_glycoprot | e6zqjG2 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Flavi_glycoprot | ECOD (1.6) |
E [auth G] | flavi_E_stem | e6zqjG3 | A: alpha arrays | X: Transmembrane domain of envelope protein E (From Topology) | H: Transmembrane domain of envelope protein E (From Topology) | T: Transmembrane domain of envelope protein E | F: flavi_E_stem | ECOD (1.6) |
B | Flavi_propep | e6zqjB1 | A: beta sandwiches | X: HSP40/DnaJ peptide-binding domain (From Topology) | H: HSP40/DnaJ peptide-binding domain (From Topology) | T: HSP40/DnaJ peptide-binding domain | F: Flavi_propep | ECOD (1.6) |
D [auth E] | Flavi_propep | e6zqjE1 | A: beta sandwiches | X: HSP40/DnaJ peptide-binding domain (From Topology) | H: HSP40/DnaJ peptide-binding domain (From Topology) | T: HSP40/DnaJ peptide-binding domain | F: Flavi_propep | ECOD (1.6) |
F [auth H] | Flavi_propep | e6zqjH1 | A: beta sandwiches | X: HSP40/DnaJ peptide-binding domain (From Topology) | H: HSP40/DnaJ peptide-binding domain (From Topology) | T: HSP40/DnaJ peptide-binding domain | F: Flavi_propep | ECOD (1.6) |
G [auth I] | Flavi_M | e6zqjI1 | A: extended segments | X: Small envelope protein M (From Topology) | H: Small envelope protein M (From Topology) | T: Small envelope protein M | F: Flavi_M | ECOD (1.6) |
H [auth F] | Flavi_M | e6zqjF1 | A: extended segments | X: Small envelope protein M (From Topology) | H: Small envelope protein M (From Topology) | T: Small envelope protein M | F: Flavi_M | ECOD (1.6) |
I [auth C] | Flavi_M | e6zqjC1 | A: extended segments | X: Small envelope protein M (From Topology) | H: Small envelope protein M (From Topology) | T: Small envelope protein M | F: Flavi_M | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth D], E [auth G] | PF00869 | Flavivirus glycoprotein, central and dimerisation domains (Flavi_glycoprot) | Flavivirus glycoprotein, central and dimerisation domains | - | Domain |
A, C [auth D], E [auth G] | PF21659 | Flavivirus envelope glycoprotein E, stem/anchor domain (Flavi_E_stem) | Flavivirus envelope glycoprotein E, stem/anchor domain | This entry represents the stem/anchor domain found at the C-terminal of envelope glycoprotein E from Flavivirus. This domain comprises a stem region followed by two transmembrane anchor domains [1-5]. | Domain |
A, C [auth D], E [auth G] | PF02832 | Flavivirus glycoprotein, immunoglobulin-like domain (Flavi_glycop_C) | Flavivirus glycoprotein, immunoglobulin-like domain | - | Domain |
PF01570 | Flavivirus polyprotein propeptide (Flavi_propep) | Flavivirus polyprotein propeptide | - | Family | |
PF01004 | Flavivirus envelope glycoprotein M (Flavi_M) | Flavivirus envelope glycoprotein M | - | Family | |
PF01003 | Flavivirus capsid protein C (Flavi_capsid) | Flavivirus capsid protein C | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |