Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
W [auth a]d6ly5a_ Membrane and cell surface proteins and peptides Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB automated matches (Chaetoceros neogracilis ) [TaxId: 240364 ], SCOPe (2.08)
X [auth b]d6ly5b_ Membrane and cell surface proteins and peptides Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB automated matches (Chaetoceros neogracilis ) [TaxId: 240364 ], SCOPe (2.08)
Y [auth c]d6ly5c_ Alpha and beta proteins (a+b) Ferredoxin-like 4Fe-4S ferredoxins 7-Fe ferredoxin automated matches (Chaetoceros neogracilis ) [TaxId: 240364 ], SCOPe (2.08)
Z [auth d]d6ly5d_ Alpha and beta proteins (a+b) Photosystem I subunit PsaD Photosystem I subunit PsaD Photosystem I subunit PsaD automated matches (Chaetoceros neogracilis ) [TaxId: 240364 ], SCOPe (2.08)
AA [auth e]d6ly5e_ All beta proteins SH3-like barrel Electron transport accessory proteins automated matches automated matches (Chaetoceros neogracilis ) [TaxId: 240364 ], SCOPe (2.08)
BA [auth f]d6ly5f1 Membrane and cell surface proteins and peptides Single transmembrane helix Subunit III of photosystem I reaction centre, PsaF automated matches automated matches (Chaetoceros neogracilis ) [TaxId: 240364 ], SCOPe (2.08)
BA [auth f]d6ly5f2 Artifacts Tags Tags Tags C-terminal Tags (Chaetoceros neogracilis ) [TaxId: 240364 ], SCOPe (2.08)
DA [auth j]d6ly5j_ Membrane and cell surface proteins and peptides Single transmembrane helix Subunit IX of photosystem I reaction centre, PsaJ automated matches automated matches (Chaetoceros neogracilis ) [TaxId: 240364 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyChlorophyll a-b binding protein8101328 4001763 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyChlorophyll a-b binding protein8101329 3000343 SCOP2 (2022-06-29)
KSCOP2 FamilyChlorophyll a-b binding protein8102039 4001763 SCOP2 (2022-06-29)
KSCOP2 SuperfamilyChlorophyll a-b binding protein8102040 3000343 SCOP2 (2022-06-29)
W [auth a]SCOP2 FamilyPhotosystem I subunits PsaA/PsaB8101322 4002118 SCOP2 (2022-06-29)
W [auth a]SCOP2 SuperfamilyPhotosystem I subunits PsaA/PsaB8101323 3000850 SCOP2 (2022-06-29)
X [auth b]SCOP2 FamilyPhotosystem I subunits PsaA/PsaB8101318 4002118 SCOP2 (2022-06-29)
X [auth b]SCOP2 SuperfamilyPhotosystem I subunits PsaA/PsaB8101319 3000850 SCOP2 (2022-06-29)
Y [auth c]SCOP2B Superfamily4Fe-4S ferredoxins8074478 3000020 SCOP2B (2022-06-29)
Z [auth d]SCOP2B SuperfamilyPhotosystem I subunit PsaD8074484 3000951 SCOP2B (2022-06-29)
AA [auth e]SCOP2B SuperfamilyElectron transport accessory proteins8074498 3000325 SCOP2B (2022-06-29)
BA [auth f]SCOP2B SuperfamilySubunit III of photosystem I reaction centre PsaF8074446 3000813 SCOP2B (2022-06-29)
DA [auth j]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre PsaJ8097086 3000824 SCOP2B (2022-06-29)
EA [auth l]SCOP2 FamilyPhotosystem I reaction center subunit XI PsaL8101320 4002135 SCOP2 (2022-06-29)
EA [auth l]SCOP2 SuperfamilyPhotosystem I reaction center subunit XI PsaL8101321 3000870 SCOP2 (2022-06-29)
FA [auth m]SCOP2B SuperfamilySubunit XII of photosystem I reaction centre PsaM8074452 3000829 SCOP2B (2022-06-29)
DSCOP2 FamilyChlorophyll a-b binding protein8101324 4001763 SCOP2 (2022-06-29)
DSCOP2 SuperfamilyChlorophyll a-b binding protein8101325 3000343 SCOP2 (2022-06-29)
ESCOP2 FamilyChlorophyll a-b binding protein8101326 4001763 SCOP2 (2022-06-29)
ESCOP2 SuperfamilyChlorophyll a-b binding protein8101327 3000343 SCOP2 (2022-06-29)
GSCOP2 FamilyChlorophyll a-b binding protein8102037 4001763 SCOP2 (2022-06-29)
GSCOP2 SuperfamilyChlorophyll a-b binding protein8102038 3000343 SCOP2 (2022-06-29)
HSCOP2 FamilyChlorophyll a-b binding protein8102067 4001763 SCOP2 (2022-06-29)
HSCOP2 SuperfamilyChlorophyll a-b binding protein8102068 3000343 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00504e6ly5A1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
JPF00504e6ly5J1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
KPF00504e6ly5K1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
LPF00504e6ly5L1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
MPF00504e6ly5M1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
NPF00504e6ly5N1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
OPF00504e6ly5O1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
PPF00504e6ly5P1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
QPF00504e6ly5Q1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
RPF00504e6ly5R1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
SPF00504e6ly5S1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
TPF00504e6ly5T1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
U [auth W]PF00504e6ly5W1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
V [auth X]PF00504e6ly5X1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
BF_UNCLASSIFIEDe6ly5B1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: F_UNCLASSIFIEDECOD (1.6)
W [auth a]PF00223e6ly5a1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
W [auth a]PF00223e6ly5a2 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
X [auth b]PF00223e6ly5b2 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
X [auth b]PF00223e6ly5b1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
Y [auth c]PF00037e6ly5c1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: PF00037ECOD (1.6)
Z [auth d]PF02531e6ly5d1 A: a+b two layersX: Photosystem I subunit PsaD (From Topology)H: Photosystem I subunit PsaD (From Topology)T: Photosystem I subunit PsaDF: PF02531ECOD (1.6)
AA [auth e]PF02427e6ly5e1 A: beta barrelsX: SH3H: SH3T: SH3F: PF02427ECOD (1.6)
BA [auth f]PF02507e6ly5f1 A: extended segmentsX: Subunit III of photosystem I reaction centre, PsaF (From Topology)H: Subunit III of photosystem I reaction centre, PsaF (From Topology)T: Subunit III of photosystem I reaction centre, PsaFF: PF02507ECOD (1.6)
CA [auth i]PF00796e6ly5i1 A: extended segmentsX: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)T: Subunit VIII of photosystem I reaction centre, PsaIF: PF00796ECOD (1.6)
DA [auth j]PF01701e6ly5j1 A: extended segmentsX: Subunit IX of photosystem I reaction centre, PsaJ (From Topology)H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology)T: Subunit IX of photosystem I reaction centre, PsaJF: PF01701ECOD (1.6)
EA [auth l]PF02605e6ly5l1 A: alpha bundlesX: Photosystem I reaction center subunit XI, PsaL (From Topology)H: Photosystem I reaction center subunit XI, PsaL (From Topology)T: Photosystem I reaction center subunit XI, PsaLF: PF02605ECOD (1.6)
FA [auth m]PF07465e6ly5m1 A: extended segmentsX: Subunit XII of photosystem I reaction centre, PsaM (From Topology)H: Subunit XII of photosystem I reaction centre, PsaM (From Topology)T: Subunit XII of photosystem I reaction centre, PsaMF: PF07465ECOD (1.6)
CPF00504e6ly5C1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
IA [auth U]PF00504e6ly5U1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
JA [auth V]PF00504e6ly5V1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
DPF00504e6ly5D1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
EPF00504e6ly5E1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
FPF00504e6ly5F1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
GPF00504e6ly5G1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
HPF00504e6ly5H1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
IPF00504e6ly5I1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
O, P, Q
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
U [auth W],
V [auth X]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
W [auth a]PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
X [auth b]PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
Y [auth c]PF146974Fe-4S dicluster domain (Fer4_21)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
Z [auth d]PF02531PsaD (PsaD)PsaD- Family
AA [auth e]PF02427Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE)Photosystem I reaction centre subunit IV / PsaEPsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1].Domain
BA [auth f]PF02507Photosystem I reaction centre subunit III (PSI_PsaF)Photosystem I reaction centre subunit III- Family
CA [auth i]PF00796Photosystem I reaction centre subunit VIII (PSI_8)Photosystem I reaction centre subunit VIII- Family
DA [auth j]PF01701Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ)Photosystem I reaction centre subunit IX / PsaJ- Family
EA [auth l]PF02605Photosystem I reaction centre subunit XI (PsaL)Photosystem I reaction centre subunit XI- Family
FA [auth m]PF07465Photosystem I protein M (PsaM) (PsaM)Photosystem I protein M (PsaM)- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
FCPI-7
FCPI-9- -
FCPI-13
FCPI-14
FCPI-16
FCPI-21
O, P, Q
FCPI
FCPI-24
FCPI-23
FCPI-12---
U [auth W],
V [auth X]
FCPI-17
FCPI-1- -
W [auth a]PsaA
X [auth b]PsaB
Y [auth c]PsaC
Z [auth d]PsaD-
AA [auth e]PsaE-
BA [auth f]PsaF
CA [auth i]PsaI-
DA [auth j]PsaJ-
EA [auth l]PsaL-
FA [auth m]PsaM-
FCPI-11
GA [auth g]PsaS---
HA [auth h]PsaR- -
IA [auth U]FCPI-2---
JA [auth V]FCPI-19---
FCPI-6
FCPI-5
FCPI-8
FCPI-4
FCPI-10
FCPI-3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily
IPR022796Chlorophyll A-B binding proteinFamily
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily
O, P, Q
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
O, P, Q
IPR022796Chlorophyll A-B binding proteinFamily
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily
U [auth W],
V [auth X]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
U [auth W],
V [auth X]
IPR022796Chlorophyll A-B binding proteinFamily
IPR022796Chlorophyll A-B binding proteinFamily
W [auth a]IPR006243Photosystem I PsaAFamily
W [auth a]IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
W [auth a]IPR001280Photosystem I PsaA/PsaBFamily
W [auth a]IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
X [auth b]IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
X [auth b]IPR001280Photosystem I PsaA/PsaBFamily
X [auth b]IPR006244Photosystem I PsaBFamily
X [auth b]IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
Y [auth c]IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
Y [auth c]IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
Y [auth c]IPR017491Photosystem I protein PsaCFamily
Z [auth d]IPR003685Photosystem I PsaDFamily
Z [auth d]IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
AA [auth e]IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
AA [auth e]IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
BA [auth f]IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
BA [auth f]IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
CA [auth i]IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
CA [auth i]IPR001302Photosystem I reaction centre subunit VIIIFamily
DA [auth j]IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
DA [auth j]IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
EA [auth l]IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
EA [auth l]IPR022980Photosystem I, reaction centre subunit XIFamily
EA [auth l]IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily
FA [auth m]IPR010010Photosystem I PsaM, reaction centreFamily
FA [auth m]IPR037279Photosystem I PsaM, reaction centre superfamilyHomologous Superfamily
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily