6VMI

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth AB]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8063850 3001397 SCOP2B (2022-06-29)
E [auth AI]SCOP2B SuperfamilyTranslational machinery components8098948 3000571 SCOP2B (2022-06-29)
F [auth AJ]SCOP2B SuperfamilyNucleic acid-binding proteins8095431 3000135 SCOP2B (2022-06-29)
G [auth AK]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052599 3000068 SCOP2B (2022-06-29)
L [auth AQ]SCOP2B SuperfamilyRibosomal protein S218053089 3002159 SCOP2B (2022-06-29)
W [auth AY]SCOP2B SuperfamilyMitochondrial 28S ribosomal protein S31-like8090914 3002471 SCOP2B (2022-06-29)
Z [auth A0]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8091481 3000334 SCOP2B (2022-06-29)
IA [auth F]SCOP2B SuperfamilyRibosomal protein L48080706 3001146 SCOP2B (2022-06-29)
KA [auth K]SCOP2B SuperfamilyRibosomal protein L138100460 3001134 SCOP2B (2022-06-29)
LA [auth L]SCOP2B Superfamily50S Ribosomal protein L14-like8072072 3000433 SCOP2B (2022-06-29)
NA [auth O]SCOP2B SuperfamilyProkaryotic ribosomal protein L178033689 3000995 SCOP2B (2022-06-29)
WA [auth 1]SCOP2B SuperfamilyZn-binding ribosomal proteins8075050 3001320 SCOP2B (2022-06-29)
ZA [auth 4]SCOP2B SuperfamilyRibosomal protein L368083324 3001346 SCOP2B (2022-06-29)
UB [auth 9]SCOP2B SuperfamilyMitochondrial ribosomal protein L27-like8053893 3002240 SCOP2B (2022-06-29)
HC [auth TC]SCOP2 FamilyRibosomal protein L7/12 C-terminal domain8098739 4001156 SCOP2 (2022-06-29)
HC [auth TC]SCOP2 SuperfamilyClpS-like8098740 3000936 SCOP2 (2022-06-29)
S [auth AR]SCOP2B SuperfamilyMitochondrial 28S ribosomal protein S22-like8051932 3002074 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth AB]PF00318e6vmiAB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
C [auth AC]PF14955e6vmiAC1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF14955ECOD (1.6)
D [auth AE]PF01250e6vmiAE1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: PF01250ECOD (1.6)
E [auth AI]PF00411e6vmiAI1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
F [auth AJ]PF00164e6vmiAJ1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
G [auth AK]PF00253e6vmiAK1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
H [auth AM]PF00886e6vmiAM1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: PF00886ECOD (1.6)
I [auth AN]PF00366e6vmiAN1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366ECOD (1.6)
J [auth AO]PF01084e6vmiAO1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
K [auth AP]PF01084e6vmiAP1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
L [auth AQ]PF01165e6vmiAQ1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: PF01165ECOD (1.6)
M [auth AT]PF05047e6vmiAT1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: PF05047ECOD (1.6)
N [auth AW]PF10246e6vmiAW1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF10246ECOD (1.6)
O [auth AX]PF10236e6vmiAX1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF10236ECOD (1.6)
O [auth AX]PF10236e6vmiAX2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF10236ECOD (1.6)
P [auth A2]PF06747e6vmiA21 A: few secondary structure elementsX: p8-MTCP1-related (From Topology)H: p8-MTCP1-related (From Topology)T: p8-MTCP1-relatedF: PF06747ECOD (1.6)
Q [auth AH]PF00338e6vmiAH1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
R [auth AL]PF00312e6vmiAL1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
T [auth AS]PF10484e6vmiAS1 A: alpha arraysX: RuvA-CH: Mitoribosomal protein mS23 (From Topology)T: Mitoribosomal protein mS23F: PF10484ECOD (1.6)
U [auth AU]PF14943e6vmiAU1 A: extended segmentsX: Mitoribosomal protein mS26 (From Topology)H: Mitoribosomal protein mS26 (From Topology)T: Mitoribosomal protein mS26F: PF14943ECOD (1.6)
W [auth AY]PF15433e6vmiAY1 A: extended segmentsX: Mitoribosomal protein mS31 (From Topology)H: Mitoribosomal protein mS31 (From Topology)T: Mitoribosomal protein mS31F: PF15433ECOD (1.6)
Y [auth A1]PF10213e6vmiA11 A: a+b two layersX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-like (From Topology)T: Peptidyl-tRNA hydrolase domain-likeF: PF10213ECOD (1.6)
Z [auth A0]PF16053e6vmiA01 A: beta barrelsX: SH3H: Mitoribosomal protein mS34 (From Topology)T: Mitoribosomal protein mS34F: PF16053ECOD (1.6)
AA [auth A3]PF08213e6vmiA31 A: extended segmentsX: Mitoribosomal protein mS38 (From Topology)H: Mitoribosomal protein mS38 (From Topology)T: Mitoribosomal protein mS38F: PF08213ECOD (1.6)
DA [auth AF]PF00177e6vmiAF1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
EA [auth AG]PF00380e6vmiAG1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
IA [auth F]PF00573e6vmiF1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
JA [auth H]PF01281e6vmiH1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: PF01281ECOD (1.6)
KA [auth K]PF00572e6vmiK1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
LA [auth L]PF00238e6vmiL1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
MA [auth M]PF00828e6vmiM1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
NA [auth O]PF01196e6vmiO1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: PF01196ECOD (1.6)
OA [auth R]PF00453e6vmiR1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: PF00453ECOD (1.6)
PA [auth S]PF00829e6vmiS1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
QA [auth T]PF00237e6vmiT1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
RA [auth W]PF01016e6vmiW1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF01016ECOD (1.6)
SA [auth X]PF00830e6vmiX1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: PF00830ECOD (1.6)
TA [auth Y]PF06984e6vmiY1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF06984ECOD (1.6)
UA [auth Z]PF00327e6vmiZ1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
VA [auth 0]PF01783e6vmi01 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)
WA [auth 1]PF00471e6vmi11 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00471ECOD (1.6)
XA [auth 2]PF00468e6vmi21 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
YA [auth 3]PF01632e6vmi31 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: PF01632ECOD (1.6)
ZA [auth 4]PF00444e6vmi41 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: PF00444ECOD (1.6)
AB [auth 8]PF09812e6vmi81 A: extended segmentsX: Mitochondrial 54S ribosomal protein L28 (From Topology)H: Mitochondrial 54S ribosomal protein L28 (From Topology)T: Mitochondrial 54S ribosomal protein L28F: PF09812ECOD (1.6)
BB [auth b]PF05047e6vmib1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: PF05047ECOD (1.6)
CB [auth e]PF11788e6vmie1 A: a+b two layersX: beta-GraspH: Nudix (From Topology)T: NudixF: PF11788ECOD (1.6)
DB [auth g]PF05046e6vmig1 A: a+b two layersX: Glucose permease domain IIB-likeH: eIF1-like (From Topology)T: eIF1-likeF: PF05046ECOD (1.6)
EB [auth i]PF10244e6vmii1 A: alpha bundlesX: Long alpha-hairpinH: Mitoribosomal protein mL51 (From Topology)T: Mitoribosomal protein mL51F: PF10244ECOD (1.6)
FB [auth j]PF18699e6vmij1 A: extended segmentsX: Mitoribosomal protein mL52 (From Topology)H: Mitoribosomal protein mL52 (From Topology)T: Mitoribosomal protein mL52F: PF18699ECOD (1.6)
GB [auth m]PF09776e6vmim1 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: PF09776ECOD (1.6)
HB [auth o]PF14978e6vmio1 A: extended segmentsX: Mitoribosomal protein mL63 (From Topology)H: Mitoribosomal protein mL63 (From Topology)T: Mitoribosomal protein mL63F: PF14978ECOD (1.6)
JB [auth r]PF01084e6vmir1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
KB [auth J]PF00298e6vmiJ2 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
KB [auth J]PF03946e6vmiJ1 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
LB [auth I]PF00466e6vmiI1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
MB [auth N]PF00252e6vmiN1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
NB [auth P]PF00861e6vmiP1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00861ECOD (1.6)
OB [auth U]PF00276e6vmiU1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
PB [auth V]PF00467,PF17136e6vmiV1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF17136ECOD (1.6)
QB [auth E]PF00297e6vmiE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
SB [auth 6]PF01161e6vmi61 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: PEBP-likeF: PF01161ECOD (1.6)
TB [auth 7]PF02824e6vmi72 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF02824ECOD (1.6)
TB [auth 7]F_UNCLASSIFIEDe6vmi71 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: ThrRS/AlaRS editing domainF: F_UNCLASSIFIEDECOD (1.6)
UB [auth 9]PF09809e6vmi91 A: extended segmentsX: Mitochondrial 54S ribosomal protein L27 (From Topology)H: Mitochondrial 54S ribosomal protein L27 (From Topology)T: Mitochondrial 54S ribosomal protein L27F: PF09809ECOD (1.6)
VB [auth a]PF10210e6vmia1 A: extended segmentsX: Mitoribosomal protein mL42 (From Topology)H: Mitoribosomal protein mL42 (From Topology)T: Mitoribosomal protein mL42F: PF10210ECOD (1.6)
WB [auth c]PF22935e6vmic2 A: alpha arraysX: RNase III catalytic domain-like (From Topology)H: RNase III catalytic domain-like (From Topology)T: RNase III catalytic domain-likeF: PF22935ECOD (1.6)
WB [auth c]PF22892e6vmic1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF22892ECOD (1.6)
XB [auth d]PF04280e6vmid1 A: a+b two layersX: Cystatin-likeH: NTF2-like (From Topology)T: NTF2-likeF: PF04280ECOD (1.6)
YB [auth f]PF00338e6vmif1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
CC [auth p]PF00472e6vmip1 A: a+b two layersX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-like (From Topology)T: Peptidyl-tRNA hydrolase domain-likeF: PF00472ECOD (1.6)
DC [auth s]PF07147e6vmis1 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PF07147ECOD (1.6)
EC [auth Q]PF01245e6vmiQ1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01245ECOD (1.6)
FC [auth TA]PF16320e6vmiTA1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
GC [auth TB]PF16320e6vmiTB1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
HC [auth TC]PF00542e6vmiTC1 A: a+b two layersX: ClpS-likeH: ClpS-related (From Topology)T: ClpS-relatedF: PF00542ECOD (1.6)
S [auth AR]PF10245e6vmiAR1 A: a+b complex topologyX: Mitoribosomal protein mS22 (From Topology)H: Mitoribosomal protein mS22 (From Topology)T: Mitoribosomal protein mS22F: PF10245ECOD (1.6)
V [auth AV]PF10037e6vmiAV1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF10037ECOD (1.6)
X [auth AZ]PF08293e6vmiAZ1 A: extended segmentsX: Mitoribosomal protein mS33 (From Topology)H: Mitoribosomal protein mS33 (From Topology)T: Mitoribosomal protein mS33F: PF08293ECOD (1.6)
CA [auth AD]PF03719e6vmiAD3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
CA [auth AD]PF00333e6vmiAD1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
CA [auth AD]PF21251e6vmiAD2 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: PF21251ECOD (1.6)
HA [auth D]PF00181e6vmiD1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
HA [auth D]PF03947e6vmiD2 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
RB [auth 5]PF07147e6vmi51 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PF07147ECOD (1.6)
ZB [auth h]PF10501e6vmih1 A: alpha bundlesX: ACP-likeH: Acyl-carrier protein (ACP) (From Topology)T: Acyl-carrier protein (ACP)F: PF10501ECOD (1.6)
AC [auth k]PF10780e6vmik1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: PF10780ECOD (1.6)
JC [auth v]PF03144e6vmiv2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF03144ECOD (1.6)
JC [auth v]PF03764e6vmiv1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03764ECOD (1.6)
JC [auth v]PF00679e6vmiv3 A: a+b two layersX: Alpha-beta plaitsH: EF-G C-terminal domain-like (From Topology)T: EF-G C-terminal domain-likeF: PF00679ECOD (1.6)
JC [auth v]PF14492e6vmiv5 A: a+b two layersX: Alpha-beta plaitsH: EF-G C-terminal domain-like (From Topology)T: EF-G C-terminal domain-likeF: PF14492ECOD (1.6)
JC [auth v]PF00009e6vmiv4 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00009ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth AB]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
C [auth AC]PF14955Mitochondrial ribosome subunit S24 (MRP-S24)Mitochondrial ribosome subunit S24- Family
D [auth AE]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
E [auth AI]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
F [auth AJ]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
G [auth AK]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
H [auth AM]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
I [auth AN]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
J [auth AO]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
K [auth AP]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
L [auth AQ]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
M [auth AT]PF05047Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8)Mitochondrial ribosomal protein L51 / S25 / CI-B8 domainThe proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ...The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.
Domain
N [auth AW]PF10246Mitochondrial ribosomal protein MRP-S35 (MRP-S35)Mitochondrial ribosomal protein MRP-S35- Family
O [auth AX]PF10236Mitochondrial ribosomal death-associated protein 3 (DAP3)Mitochondrial ribosomal death-associated protein 3- Family
P [auth A2]PF06747CHCH domain (CHCH)CHCH domainwe have identified a conserved motif in the LOC118487 protein that we have called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extende ...we have identified a conserved motif in the LOC118487 protein that we have called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11-kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation [2]. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit [3]. The CHCH domain was previously called DUF657 [4].
Domain
Q [auth AH]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
R [auth AL]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
T [auth AS]PF10484Mitochondrial ribosomal protein S23 (MRP-S23)Mitochondrial ribosomal protein S23- Family
U [auth AU]PF14943Mitochondrial ribosome subunit S26 (MRP-S26)Mitochondrial ribosome subunit S26- Family
W [auth AY]PF15433Mitochondrial 28S ribosomal protein S31 (MRP-S31)Mitochondrial 28S ribosomal protein S31- Family
Y [auth A1]PF10213Mitochondrial ribosomal subunit protein (MRP-S28)Mitochondrial ribosomal subunit protein- Family
Z [auth A0]PF16053Mitochondrial 28S ribosomal protein S34 (MRP-S34)Mitochondrial 28S ribosomal protein S34- Family
AA [auth A3]PF08213Mitochondrial mRNA-processing protein COX24, C-terminal (COX24_C)Mitochondrial mRNA-processing protein COX24, C-terminalThis domain of unknown function is found at the C terminal end of Mitochondrial small ribosomal subunit protein mS38, also known as Mitochondrial mRNA-processing protein COX24 in yeast which is involved in the splicing of the COX1 mRNA [1]. COX24 is ...This domain of unknown function is found at the C terminal end of Mitochondrial small ribosomal subunit protein mS38, also known as Mitochondrial mRNA-processing protein COX24 in yeast which is involved in the splicing of the COX1 mRNA [1]. COX24 is a component of the mitochondrial ribosome (mitoribosome), responsible for the synthesis of mitochondrial genome-encoded proteins, including at least some of the essential transmembrane subunits of the mitochondrial respiratory chain. The mitoribosomes are attached to the mitochondrial inner membrane and translation products are cotranslationally integrated into the membrane [2,3]. This domain is also found in COX24 mammalian homologue Aurora kinase A-interacting protein [4]. This entry also includes uncharacterised proteins from bacteria.
Domain
BA [auth A4]PF13812Pentatricopeptide repeat domain (PPR_3)Pentatricopeptide repeat domain- Repeat
BA [auth A4]PF13041PPR repeat family (PPR_2)PPR repeat family- Repeat
DA [auth AF]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
EA [auth AG]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
IA [auth F]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
JA [auth H]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
KA [auth K]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
LA [auth L]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
MA [auth M]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
NA [auth O]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
OA [auth R]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
PA [auth S]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
QA [auth T]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
RA [auth W]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
SA [auth X]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
TA [auth Y]PF06984Mitochondrial 39-S ribosomal protein L47 (MRP-L47) (MRP-L47)Mitochondrial 39-S ribosomal protein L47 (MRP-L47)- Family
UA [auth Z]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
VA [auth 0]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
WA [auth 1]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
XA [auth 2]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
YA [auth 3]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
ZA [auth 4]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
AB [auth 8]PF09812Mitochondrial ribosomal protein L28 (MRP-L28)Mitochondrial ribosomal protein L28- Family
BB [auth b]PF05047Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8)Mitochondrial ribosomal protein L51 / S25 / CI-B8 domainThe proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ...The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.
Domain
CB [auth e]PF1178839S mitochondrial ribosomal protein L46 (MRP-L46)39S mitochondrial ribosomal protein L46- Family
DB [auth g]PF05046Mitochondrial large subunit ribosomal protein (Img2) (Img2)Mitochondrial large subunit ribosomal protein (Img2)This family of proteins have been identified as part of the mitochondrial large ribosomal subunit in yeast [1].Domain
EB [auth i]PF10244Mitochondrial ribosomal subunit (MRP-L51)Mitochondrial ribosomal subunit- Family
FB [auth j]PF18699Mitoribosomal protein mL52 (MRPL52)Mitoribosomal protein mL52- Family
GB [auth m]PF09776Mitochondrial ribosomal protein L55 (Mitoc_L55)Mitochondrial ribosomal protein L55- Family
HB [auth o]PF14978Mitochondrial ribosome protein 63 (MRP-63)Mitochondrial ribosome protein 63- Family
IB [auth q]PF10147Growth arrest and DNA-damage-inducible proteins-interacting protein 1 (CR6_interact)Growth arrest and DNA-damage-inducible proteins-interacting protein 1- Family
JB [auth r]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
KB [auth J]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
KB [auth J]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
LB [auth I]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
MB [auth N]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
NB [auth P]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
OB [auth U]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
PB [auth V]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
PB [auth V]PF00467KOW motif (KOW)KOW motif- Family
QB [auth E]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
SB [auth 6]PF01161Phosphatidylethanolamine-binding protein (PBP)Phosphatidylethanolamine-binding protein- Domain
UB [auth 9]PF09809Mitochondrial ribosomal protein L27 (MRP-L27)Mitochondrial ribosomal protein L27- Family
VB [auth a]PF10210Mitochondrial 28S ribosomal protein S32 (MRP-S32)Mitochondrial 28S ribosomal protein S32- Family
XB [auth d]PF04280Tim44-like domain (Tim44)Tim44-like domainTim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostati ...Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [1]. This family includes the C-terminal region of Tim44 that has been shown to form a stable proteolytic fragment in yeast. This region is also found in a set of smaller bacterial proteins. The molecular function of the bacterial members of this family is unknown but transport seems likely. The crystal structure of the C terminal of Tim44 has revealed a large hydrophobic pocket which might play an important role in interacting with the acyl chains of lipid molecules in the mitochondrial membrane [3].
Domain
YB [auth f]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
BC [auth l]PF08561Mitochondrial ribosomal protein L37 (Ribosomal_L37)Mitochondrial ribosomal protein L37- Family
CC [auth p]PF00472RF-1 domain (RF-1)RF-1 domain- Family
DC [auth s]PF07147Mitochondrial 28S ribosomal protein S30 (PDCD9) (PDCD9)Mitochondrial 28S ribosomal protein S30 (PDCD9)- Family
EC [auth Q]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
FC [auth TA],
GC [auth TB],
HC [auth TC]
PF16320Ribosomal protein L7/L12 dimerisation domain (Ribosomal_L12_N)Ribosomal protein L7/L12 dimerisation domainThis is the N-terminal dimerisation domain of ribosomal protein L7/L12 [1].Domain
FC [auth TA],
GC [auth TB],
HC [auth TC]
PF00542Ribosomal protein L7/L12 C-terminal domain (Ribosomal_L12)Ribosomal protein L7/L12 C-terminal domain- Domain
S [auth AR]PF10245Mitochondrial 28S ribosomal protein S22 (MRP-S22)Mitochondrial 28S ribosomal protein S22- Family
V [auth AV]PF10037Mitochondrial 28S ribosomal protein S27 (MRP-S27)Mitochondrial 28S ribosomal protein S27- Repeat
X [auth AZ]PF08293Mitochondrial ribosomal subunit S27 (MRP-S33)Mitochondrial ribosomal subunit S27- Family
CA [auth AD]PF2125140S ribosomal protein rpS2 (S5p), N-terminal (S5p_N)40S ribosomal protein rpS2 (S5p), N-terminalThis entry represents an extension found at the N-terminal of mammalian 28S ribosomal protein S5 [1,2]. This lines a part of the mRNA entry path and connects the 28S subunit body to the head forming a latch across the mRNA channel entrance [2].Domain
CA [auth AD]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
CA [auth AD]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
HA [auth D]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
HA [auth D]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
RB [auth 5]PF07147Mitochondrial 28S ribosomal protein S30 (PDCD9) (PDCD9)Mitochondrial 28S ribosomal protein S30 (PDCD9)- Family
ZB [auth h]PF10501Ribosomal subunit 39S (Ribosomal_L50)Ribosomal subunit 39SThe 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units [1]. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [2]. In E. coli, in the absenc ...The 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units [1]. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [2]. In E. coli, in the absence of the enzyme pseudouridine synthase (RluD) synthase, there is an accumulation of 50S and 30S subunits and the appearance of abnormal particles (62S and 39S), with concomitant loss of 70S ribosomes [2].
Domain
AC [auth k]PF1078039S ribosomal protein L53/MRP-L53 (MRP_L53)39S ribosomal protein L53/MRP-L53- Family
JC [auth v]PF00679Elongation factor G C-terminus (EFG_C)Elongation factor G C-terminusThis domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.Domain
JC [auth v]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.Domain
JC [auth v]PF14492Elongation Factor G, domain III (EFG_III)Elongation Factor G, domain IIIThis domain is found in Elongation Factor G. It shares a similar structure with domain V (Pfam:PF00679). Structural studies in drosophila indicate this is domain 3 [1].Domain
JC [auth v]PF03144Elongation factor Tu domain 2 (GTP_EFTU_D2)Elongation factor Tu domain 2Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ...Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain.
Domain
JC [auth v]PF03764Elongation factor G, domain IV (EFG_IV)Elongation factor G, domain IVThis domain is found in elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopts a ribosomal protein S5 domain 2-like fold.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth AA]12s rRNA---
B [auth AB]28S ribosomal protein S2, mitochondrial
C [auth AC]28S ribosomal protein S24, mitochondrial
D [auth AE]28S ribosomal protein S6, mitochondrial
E [auth AI]28S ribosomal protein S11, mitochondrial
F [auth AJ]28S ribosomal protein S12, mitochondrial
G [auth AK]28S ribosomal protein S14, mitochondrial
H [auth AM]28S ribosomal protein S16, mitochondrial
I [auth AN]28S ribosomal protein S17, mitochondrial
J [auth AO]28S ribosomal protein S18b, mitochondrial
K [auth AP]28S ribosomal protein S18c, mitochondrial
L [auth AQ]28S ribosomal protein S21, mitochondrial
M [auth AT]28S ribosomal protein S25, mitochondrial
N [auth AW]28S ribosomal protein S28, mitochondrial
O [auth AX]28S ribosomal protein S29, mitochondrial
P [auth A2]Coiled-coil-helix-coiled-coil-helix domain-containing protein 1
Q [auth AH]28S ribosomal protein S10, mitochondrial-
R [auth AL]28S ribosomal protein S15, mitochondrial
T [auth AS]28S ribosomal protein S23, mitochondrial
U [auth AU]28S ribosomal protein S26, mitochondrial
W [auth AY]28S ribosomal protein S31, mitochondrial
Y [auth A1]28S ribosomal protein S35, mitochondrial
Z [auth A0]28S ribosomal protein S34, mitochondrial
AA [auth A3]Aurora kinase A-interacting protein-
BA [auth A4]Pentatricopeptide repeat domain-containing protein 3, mitochondrial
DA [auth AF]28S ribosomal protein S7, mitochondrial
EA [auth AG]28S ribosomal protein S9, mitochondrial
FA [auth A]16s rRNA---
GA [auth B]tRNAval---
IA [auth F]39S ribosomal protein L4, mitochondrial
JA [auth H]39S ribosomal protein L9, mitochondrial
KA [auth K]39S ribosomal protein L13, mitochondrial
LA [auth L]39S ribosomal protein L14, mitochondrial
MA [auth M]39S ribosomal protein L15, mitochondrial
NA [auth O]39S ribosomal protein L17, mitochondrial
OA [auth R]39S ribosomal protein L20, mitochondrial
PA [auth S]39S ribosomal protein L21, mitochondrial
QA [auth T]39S ribosomal protein L22, mitochondrial
RA [auth W]39S ribosomal protein L27, mitochondrial
SA [auth X]39S ribosomal protein L28, mitochondrial
TA [auth Y]39S ribosomal protein L47, mitochondrial
UA [auth Z]39S ribosomal protein L30, mitochondrial
VA [auth 0]39S ribosomal protein L32, mitochondrial
WA [auth 1]39S ribosomal protein L33, mitochondrial
XA [auth 2]39S ribosomal protein L34, mitochondrial
YA [auth 3]39S ribosomal protein L35, mitochondrial
ZA [auth 4]39S ribosomal protein L36, mitochondrial
AB [auth 8]39S ribosomal protein L40, mitochondrial
BB [auth b]39S ribosomal protein L43, mitochondrial
CB [auth e]39S ribosomal protein L46, mitochondrial
DB [auth g]39S ribosomal protein L49, mitochondrial
EB [auth i]39S ribosomal protein L51, mitochondrial
FB [auth j]cDNA FLJ76418, highly similar to Homo sapiens mitochondrial ribosomal protein L52 (MRPL52), transcript variant 1, mRNA
GB [auth m]39S ribosomal protein L55, mitochondrial
HB [auth o]Ribosomal protein 63, mitochondrial
IB [auth q]Growth arrest and DNA damage-inducible proteins-interacting protein 1-
JB [auth r]39S ribosomal protein S18a, mitochondrial
KB [auth J]39S ribosomal protein L11, mitochondrial
LB [auth I]39S ribosomal protein L10, mitochondrial
MB [auth N]39S ribosomal protein L16, mitochondrial
NB [auth P]Mitochondrial ribosomal protein L18, isoform CRA_b
OB [auth U]39S ribosomal protein L23, mitochondrial
PB [auth V]39S ribosomal protein L24, mitochondrial
QB [auth E]39S ribosomal protein L3, mitochondrial
SB [auth 6]39S ribosomal protein L38, mitochondrial-
TB [auth 7]39S ribosomal protein L39, mitochondrial
UB [auth 9]39S ribosomal protein L41, mitochondrial
VB [auth a]39S ribosomal protein L42, mitochondrial
WB [auth c]39S ribosomal protein L44, mitochondrial
XB [auth d]39S ribosomal protein L45, mitochondrial
YB [auth f]39S ribosomal protein L48, mitochondrial-
BC [auth l]39S ribosomal protein L54, mitochondrial
CC [auth p]Peptidyl-tRNA hydrolase ICT1, mitochondrial
DC [auth s]39S ribosomal protein S30, mitochondrial
EC [auth Q]39S ribosomal protein L19, mitochondrial
FC [auth TA],
GC [auth TB],
HC [auth TC]
39S ribosomal protein L12, mitochondrial
IC [auth u]P-site finger---
KC [auth A5]mRNA---
LC [auth A6],
MC [auth A7]
P-site and E-site tRNA---
S [auth AR]28S ribosomal protein S22, mitochondrial
V [auth AV]28S ribosomal protein S27, mitochondrial
X [auth AZ]28S ribosomal protein S33, mitochondrial
CA [auth AD]28S ribosomal protein S5, mitochondrial
HA [auth D]39S ribosomal protein L2, mitochondrial
RB [auth 5]39S ribosomal protein L37, mitochondrial
ZB [auth h]39S ribosomal protein L50, mitochondrial-
AC [auth k]39S ribosomal protein L53, mitochondrial-
JC [auth v]Elongation factor G, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth AB]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
B [auth AB]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth AB]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth AB]IPR001865Small ribosomal subunit protein uS2Family
C [auth AC]IPR026146Small ribosomal subunit protein uS3m, metazoanFamily
D [auth AE]IPR000529Small ribosomal subunit protein bS6Family
D [auth AE]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
D [auth AE]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
E [auth AI]IPR001971Small ribosomal subunit protein uS11Family
E [auth AI]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
E [auth AI]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
F [auth AJ]IPR006032Small ribosomal subunit protein uS12Family
F [auth AJ]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
F [auth AJ]IPR005679Ribosomal protein uS12, bacterial-typeFamily
G [auth AK]IPR001209Small ribosomal subunit protein uS14Family
H [auth AM]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
H [auth AM]IPR000307Small ribosomal subunit protein bS16Family
I [auth AN]IPR039193Small ribosomal subunit protein uS17m, metazoaFamily
I [auth AN]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
I [auth AN]IPR000266Small ribosomal subunit protein uS17Family
J [auth AO]IPR040054Small ribosomal subunit protein mS40Family
J [auth AO]IPR001648Small ribosomal subunit protein bS18Family
J [auth AO]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
K [auth AP]IPR001648Small ribosomal subunit protein bS18Family
K [auth AP]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
K [auth AP]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
L [auth AQ]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
L [auth AQ]IPR001911Small ribosomal subunit protein bS21Family
M [auth AT]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
M [auth AT]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
M [auth AT]IPR040049Ribosomal subunit protein mS25/mL61, mitochondrialFamily
N [auth AW]IPR019375Small ribosomal subunit protein bS1mFamily
O [auth AX]IPR008092Small ribosomal subunit protein mS29, metazoan-typeFamily
O [auth AX]IPR019368Small ribosomal subunit protein mS29Family
O [auth AX]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
P [auth A2]IPR010625CHCHDomain
P [auth A2]IPR009069Cysteine alpha-hairpin motif superfamilyHomologous Superfamily
P [auth A2]IPR033620Small ribosomal subunit protein mS37, metazoanFamily
Q [auth AH]IPR027486Small ribosomal subunit protein uS10 domainDomain
Q [auth AH]IPR040055Small ribosomal subunit protein uS10mFamily
Q [auth AH]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
R [auth AL]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
R [auth AL]IPR000589Small ribosomal subunit protein uS15Family
R [auth AL]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
T [auth AS]IPR023611Small ribosomal subunit protein mS23, conserved domainDomain
T [auth AS]IPR019520Small ribosomal subunit protein mS23, metazoaFamily
U [auth AU]IPR026140Small ribosomal subunit protein mS26Family
W [auth AY]IPR026299Mitochondrial 28S ribosomal protein S31Family
Y [auth A1]IPR039848Small ribosomal subunit protein mS35, mitochondrialFamily
Y [auth A1]IPR019349Small ribosomal subunit protein mS35, mitochondrial, conserved domainDomain
Z [auth A0]IPR032053Small ribosomal subunit protein mS34Family
AA [auth A3]IPR013177Ribosomal protein mS38, C-terminalDomain
BA [auth A4]IPR037387Pentatricopeptide repeat domain-containing protein 3Family
BA [auth A4]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
BA [auth A4]IPR002885Pentatricopeptide repeatRepeat
DA [auth AF]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
DA [auth AF]IPR000235Small ribosomal subunit protein uS7Family
DA [auth AF]IPR023798Small ribosomal subunit protein uS7 domainDomain
EA [auth AG]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
EA [auth AG]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
EA [auth AG]IPR000754Small ribosomal subunit protein uS9Family
EA [auth AG]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
IA [auth F]IPR013005Large ribosomal subunit protein uL4-likeFamily
IA [auth F]IPR002136Large ribosomal subunit protein uL4Family
IA [auth F]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
JA [auth H]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
JA [auth H]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
JA [auth H]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
JA [auth H]IPR000244Large ribosomal subunit protein bL9Family
KA [auth K]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
KA [auth K]IPR005822Large ribosomal subunit protein uL13Family
KA [auth K]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
KA [auth K]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
LA [auth L]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
LA [auth L]IPR000218Large ribosomal subunit protein uL14Family
MA [auth M]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
MA [auth M]IPR021131Large ribosomal subunit protein uL15/eL18Domain
MA [auth M]IPR030878Large ribosomal subunit protein uL15Family
MA [auth M]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
NA [auth O]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
NA [auth O]IPR000456Large ribosomal subunit protein bL17Family
OA [auth R]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
OA [auth R]IPR005813Large ribosomal subunit protein bL20Family
PA [auth S]IPR028909Large ribosomal subunit protein bL21-likeFamily
PA [auth S]IPR001787Large ribosomal subunit protein bL21Family
PA [auth S]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
QA [auth T]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
QA [auth T]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
QA [auth T]IPR001063Large ribosomal subunit protein uL22Family
RA [auth W]IPR001684Large ribosomal subunit protein bL27Family
SA [auth X]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
SA [auth X]IPR026569Large ribosomal subunit protein bL28Family
SA [auth X]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
TA [auth Y]IPR038340MRP-L47 superfamily, mitochondrialHomologous Superfamily
TA [auth Y]IPR010729Large ribosomal subunit protein uL29m, mitochondrialFamily
UA [auth Z]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
UA [auth Z]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
UA [auth Z]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
VA [auth 0]IPR002677Large ribosomal subunit protein bL32Family
VA [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
WA [auth 1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
WA [auth 1]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
WA [auth 1]IPR001705Large ribosomal subunit protein bL33Family
XA [auth 2]IPR000271Large ribosomal subunit protein bL34Family
YA [auth 3]IPR021137Large ribosomal subunit protein bL35-likeFamily
YA [auth 3]IPR019338Large ribosomal subunit protein bL35mFamily
YA [auth 3]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
ZA [auth 4]IPR000473Large ribosomal subunit protein bL36Family
ZA [auth 4]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
AB [auth 8]IPR019192Large ribosomal subunit protein mL40Family
AB [auth 8]IPR039145Large ribosomal subunit protein mL40, metazoa/plantsFamily
BB [auth b]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
BB [auth b]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
BB [auth b]IPR039927Large ribosomal subunit protein mL43Family
CB [auth e]IPR015797NUDIX hydrolase-like domain superfamilyHomologous Superfamily
CB [auth e]IPR021757Large ribosomal subunit protein mL46, N-terminalDomain
CB [auth e]IPR040008Large ribosomal subunit protein mL46Family
CB [auth e]IPR033650Large ribosomal subunit protein mL46, NUDIX domainDomain
DB [auth g]IPR007740Large ribosomal subunit protein mL49Family
EB [auth i]IPR019373Large ribosomal subunit protein mL51Family
FB [auth j]IPR034596Large ribosomal subunit protein mL52Family
GB [auth m]IPR044884Large ribosomal subunit protein mL55 superfamilyHomologous Superfamily
GB [auth m]IPR018615Large ribosomal subunit protein mL55Family
HB [auth o]IPR016576Large ribosomal subunit protein mL63Family
IB [auth q]IPR018472Large ribosomal subunit protein mL64Family
IB [auth q]IPR043035Large ribosomal subunit protein mL64 domain superfamilyHomologous Superfamily
JB [auth r]IPR001648Small ribosomal subunit protein bS18Family
JB [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
KB [auth J]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
KB [auth J]IPR000911Ribosomal protein uL11Family
KB [auth J]IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
KB [auth J]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
KB [auth J]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
KB [auth J]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
LB [auth I]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
LB [auth I]IPR001790Large ribosomal subunit protein uL10Family
LB [auth I]IPR047865Large ribosomal subunit protein uL10, bacterial typeFamily
MB [auth N]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
MB [auth N]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
MB [auth N]IPR016180Large ribosomal subunit protein uL16 domainDomain
MB [auth N]IPR047873Large ribosomal subunit protein uL16Family
NB [auth P]IPR005484Large ribosomal subunit protein uL18Family
NB [auth P]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
OB [auth U]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
OB [auth U]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
OB [auth U]IPR013025Large ribosomal subunit protein uL23-likeFamily
PB [auth V]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
PB [auth V]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
PB [auth V]IPR003256Large ribosomal subunit protein uL24Family
PB [auth V]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
PB [auth V]IPR005824KOWDomain
PB [auth V]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
QB [auth E]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
QB [auth E]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
QB [auth E]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
QB [auth E]IPR000597Large ribosomal subunit protein uL3Family
SB [auth 6]IPR036610PEBP-like superfamilyHomologous Superfamily
SB [auth 6]IPR008914Phosphatidylethanolamine-binding proteinFamily
SB [auth 6]IPR035810Phosphatidylethanolamine-binding protein, eukaryoticFamily
TB [auth 7]IPR012676TGS-likeHomologous Superfamily
TB [auth 7]IPR018163Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamilyHomologous Superfamily
TB [auth 7]IPR004095TGSDomain
TB [auth 7]IPR012675Beta-grasp domain superfamilyHomologous Superfamily
UB [auth 9]IPR019189Large ribosomal subunit protein mL41Family
VB [auth a]IPR019346Large ribosomal subunit protein mL42Family
WB [auth c]IPR036389Ribonuclease III, endonuclease domain superfamilyHomologous Superfamily
WB [auth c]IPR044444Large ribosomal subunit protein mL44, dsRNA binding domain, metazoaDomain
WB [auth c]IPR014720Double-stranded RNA-binding domainDomain
XB [auth d]IPR032710NTF2-like domain superfamilyHomologous Superfamily
XB [auth d]IPR007379Tim44-like domainDomain
YB [auth f]IPR027486Small ribosomal subunit protein uS10 domainDomain
YB [auth f]IPR027487Large ribosomal subunit protein mL48Family
YB [auth f]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
BC [auth l]IPR013870Large ribosomal subunit protein mL54Family
CC [auth p]IPR000352Peptide chain release factor class IDomain
DC [auth s]IPR039982Large ribosomal subunit protein mL65Family
DC [auth s]IPR010793Large ribosomal subunit protein mL37/mL65Family
EC [auth Q]IPR001857Large ribosomal subunit protein bL19Family
EC [auth Q]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
EC [auth Q]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
FC [auth TA],
GC [auth TB],
HC [auth TC]
IPR013823Large ribosomal subunit protein bL12, C-terminalDomain
FC [auth TA],
GC [auth TB],
HC [auth TC]
IPR008932Large ribosomal subunit protein bL12, oligomerizationDomain
FC [auth TA],
GC [auth TB],
HC [auth TC]
IPR036235Large ribosomal subunit protein bL12, oligomerization domain superfamilyHomologous Superfamily
FC [auth TA],
GC [auth TB],
HC [auth TC]
IPR014719Ribosomal protein bL12, C-terminal/adaptor protein ClpS-likeHomologous Superfamily
FC [auth TA],
GC [auth TB],
HC [auth TC]
IPR000206Large ribosomal subunit protein bL12Family
S [auth AR]IPR019374Small ribosomal subunit protein mS22Family
V [auth AV]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
V [auth AV]IPR002885Pentatricopeptide repeatRepeat
V [auth AV]IPR019266Small ribosomal subunit protein mS27Family
V [auth AV]IPR034913mS27/PTCD2Family
X [auth AZ]IPR013219Small ribosomal subunit protein mS33Family
CA [auth AD]IPR000851Small ribosomal subunit protein uS5Family
CA [auth AD]IPR048584Small ribosomal subunit protein uS5m, N-terminal domainDomain
CA [auth AD]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
CA [auth AD]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
CA [auth AD]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
CA [auth AD]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
CA [auth AD]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
HA [auth D]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
HA [auth D]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
HA [auth D]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
HA [auth D]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
HA [auth D]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
HA [auth D]IPR002171Large ribosomal subunit protein uL2Family
RB [auth 5]IPR010793Large ribosomal subunit protein mL37/mL65Family
ZB [auth h]IPR018305Large ribosomal subunit protein mL50Family
AC [auth k]IPR019716Large ribosomal subunit protein mL53Family
JC [auth v]IPR005517Translation elongation factor EFG/EF2, domain IVDomain
JC [auth v]IPR004540Translation elongation factor EFG/EF2Family
JC [auth v]IPR000795Translational (tr)-type GTP-binding domainDomain
JC [auth v]IPR000640Elongation factor EFG, domain V-likeDomain
JC [auth v]IPR031157Tr-type G domain, conserved siteConserved Site
JC [auth v]IPR009022Elongation factor G, domain IIIDomain
JC [auth v]IPR035647EF-G domain III/V-likeHomologous Superfamily
JC [auth v]IPR041095Elongation Factor G, domain IIDomain
JC [auth v]IPR004161Translation elongation factor EFTu-like, domain 2Domain
JC [auth v]IPR047872Elongation factor G, domain IVDomain
JC [auth v]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
JC [auth v]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
JC [auth v]IPR005225Small GTP-binding protein domainDomain
JC [auth v]IPR035649EFG, domain VDomain
JC [auth v]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
JC [auth v]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B [auth AB]PharosQ9Y399
D [auth AE]PharosP82932
E [auth AI]PharosP82912
F [auth AJ]PharosO15235
G [auth AK]PharosO60783
H [auth AM]PharosQ9Y3D3
I [auth AN]PharosQ9Y2R5
J [auth AO]PharosQ9Y676
K [auth AP]PharosQ9Y3D5
L [auth AQ]PharosP82921
M [auth AT]PharosP82663
N [auth AW]PharosQ9Y2Q9
O [auth AX]PharosP51398
P [auth A2]PharosQ96BP2
Q [auth AH]PharosP82664
R [auth AL]PharosP82914
T [auth AS]PharosQ9Y3D9
W [auth AY]PharosQ92665
Y [auth A1]PharosP82673
Z [auth A0]PharosP82930
AA [auth A3]PharosQ9NWT8
BA [auth A4]PharosQ96EY7
DA [auth AF]PharosQ9Y2R9
EA [auth AG]PharosP82933
IA [auth F]PharosQ9BYD3
JA [auth H]PharosQ9BYD2
KA [auth K]PharosQ9BYD1
LA [auth L]PharosQ6P1L8
MA [auth M]PharosQ9P015
NA [auth O]PharosQ9NRX2
OA [auth R]PharosQ9BYC9
RA [auth W]PharosQ9P0M9
SA [auth X]PharosQ13084
TA [auth Y]PharosQ9HD33
UA [auth Z]PharosQ8TCC3
VA [auth 0]PharosQ9BYC8
WA [auth 1]PharosO75394
XA [auth 2]PharosQ9BQ48
YA [auth 3]PharosQ9NZE8
ZA [auth 4]PharosQ9P0J6
AB [auth 8]PharosQ9NQ50
BB [auth b]PharosQ8N983
DB [auth g]PharosQ13405
EB [auth i]PharosQ4U2R6
GB [auth m]PharosQ7Z7F7
HB [auth o]PharosQ9BQC6
IB [auth q]PharosQ8TAE8
JB [auth r]PharosQ9NVS2
KB [auth J]PharosQ9Y3B7
LB [auth I]PharosQ7Z7H8
MB [auth N]PharosQ9NX20
OB [auth U]PharosQ16540
PB [auth V]PharosQ96A35
QB [auth E]PharosP09001
TB [auth 7]PharosQ9NYK5
UB [auth 9]PharosQ8IXM3
VB [auth a]PharosQ9Y6G3
WB [auth c]PharosQ9H9J2
XB [auth d]PharosQ9BRJ2
YB [auth f]PharosQ96GC5
BC [auth l]PharosQ6P161
CC [auth p]PharosQ14197
DC [auth s]PharosQ9NP92
EC [auth Q]PharosP49406
FC [auth TA],
GC [auth TB],
HC [auth TC]
PharosP52815
S [auth AR]PharosP82650
V [auth AV]PharosQ92552
X [auth AZ]PharosQ9Y291
CA [auth AD]PharosP82675
HA [auth D]PharosQ5T653
RB [auth 5]PharosQ9BZE1
ZB [auth h]PharosQ8N5N7
JC [auth v]PharosQ96RP9