7NSH

39S mammalian mitochondrial large ribosomal subunit with mtRRF (post) and mtEFG2


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
EA [auth B9]SCOP2B SuperfamilyRibosomal protein L368083322 3001346 SCOP2B (2022-06-29)
RA [auth BG]SCOP2B SuperfamilyRibosome recycling factor RRF8100392 3001524 SCOP2B (2022-06-29)
SA [auth BQ]SCOP2B SuperfamilyRibosomal protein L16p/L10e8076055 3000884 SCOP2B (2022-06-29)
VA [auth BF]SCOP2B SuperfamilyRibosomal protein L48096626 3001146 SCOP2B (2022-06-29)
WA [auth BI]SCOP2B SuperfamilyL9 N-domain-like8070579 3000338 SCOP2B (2022-06-29)
ZA [auth BN]SCOP2B SuperfamilyRibosomal protein L138098010 3001134 SCOP2B (2022-06-29)
GB [auth BV]SCOP2B Superfamilyl21p-like8082451 3002005 SCOP2B (2022-06-29)
B [auth BY]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8082519 3000334 SCOP2B (2022-06-29)
EB [auth BT]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8089132 3000334 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth B0]PF01016e7nshB01 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF01016ECOD (1.6)
D [auth B8]PF01632e7nshB81 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: PF01632ECOD (1.6)
E [auth Bb]PF01161e7nshBb1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: PEBP-likeF: PF01161ECOD (1.6)
F [auth Bc]PF02824e7nshBc1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF02824ECOD (1.6)
F [auth Bc]F_UNCLASSIFIEDe7nshBc2 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: ThrRS/AlaRS editing domainF: F_UNCLASSIFIEDECOD (1.6)
G [auth Bd]PF09812e7nshBd1 A: extended segmentsX: Mitochondrial 54S ribosomal protein L28 (From Topology)H: Mitochondrial 54S ribosomal protein L28 (From Topology)T: Mitochondrial 54S ribosomal protein L28F: PF09812ECOD (1.6)
H [auth Be]PF09809e7nshBe1 A: extended segmentsX: Mitochondrial 54S ribosomal protein L27 (From Topology)H: Mitochondrial 54S ribosomal protein L27 (From Topology)T: Mitochondrial 54S ribosomal protein L27F: PF09809ECOD (1.6)
I [auth Bf]PF10210e7nshBf1 A: extended segmentsX: Mitoribosomal protein mL42 (From Topology)H: Mitoribosomal protein mL42 (From Topology)T: Mitoribosomal protein mL42F: PF10210ECOD (1.6)
J [auth Bg]PF05047e7nshBg1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: PF05047ECOD (1.6)
K [auth Bh]PF22935e7nshBh2 A: alpha arraysX: RNase III catalytic domain-like (From Topology)H: RNase III catalytic domain-like (From Topology)T: RNase III catalytic domain-likeF: PF22935ECOD (1.6)
K [auth Bh]PF22892e7nshBh1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF22892ECOD (1.6)
L [auth Bi]PF04280e7nshBi1 A: a+b two layersX: Cystatin-likeH: NTF2-like (From Topology)T: NTF2-likeF: PF04280ECOD (1.6)
M [auth Bj]PF11788e7nshBj1 A: a+b two layersX: beta-GraspH: Nudix (From Topology)T: NudixF: PF11788ECOD (1.6)
N [auth Bk]PF00338e7nshBk1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
O [auth Bl]PF05046e7nshBl1 A: a+b two layersX: Glucose permease domain IIB-likeH: eIF1-like (From Topology)T: eIF1-likeF: PF05046ECOD (1.6)
P [auth Bm]PF10501e7nshBm1 A: alpha bundlesX: ACP-likeH: Acyl-carrier protein (ACP) (From Topology)T: Acyl-carrier protein (ACP)F: PF10501ECOD (1.6)
Q [auth Bn]PF10244e7nshBn1 A: alpha bundlesX: Long alpha-hairpinH: Mitoribosomal protein mL51 (From Topology)T: Mitoribosomal protein mL51F: PF10244ECOD (1.6)
R [auth Bo]PF18699e7nshBo1 A: extended segmentsX: Mitoribosomal protein mL52 (From Topology)H: Mitoribosomal protein mL52 (From Topology)T: Mitoribosomal protein mL52F: PF18699ECOD (1.6)
S [auth Bp]PF10780e7nshBp1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: PF10780ECOD (1.6)
U [auth Bt]PF14978e7nshBt1 A: extended segmentsX: Mitoribosomal protein mL63 (From Topology)H: Mitoribosomal protein mL63 (From Topology)T: Mitoribosomal protein mL63F: PF14978ECOD (1.6)
V [auth Bu]PF00472e7nshBu1 A: a+b two layersX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-like (From Topology)T: Peptidyl-tRNA hydrolase domain-likeF: PF00472ECOD (1.6)
W [auth Bv]PF10147e7nshBv1 A: extended segmentsX: Mitochondrial 54S ribosomal protein L25 (From Topology)H: Mitochondrial 54S ribosomal protein L25 (From Topology)T: Mitochondrial 54S ribosomal protein L25F: PF10147ECOD (1.6)
Y [auth Bx]PF01084e7nshBx1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
EA [auth B9]PF00444e7nshB91 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: PF00444ECOD (1.6)
IA [auth B2]PF06984e7nshB21 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF06984ECOD (1.6)
JA [auth B3]PF00327e7nshB31 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
KA [auth B4]PF09776e7nshB41 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: PF09776ECOD (1.6)
LA [auth B5]PF01783e7nshB51 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)
MA [auth B6]PF00471e7nshB61 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00471ECOD (1.6)
NA [auth B7]PF00468e7nshB71 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
PA [auth BC]PF22042e7nshBC2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF22042ECOD (1.6)
PA [auth BC]PF03764e7nshBC1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03764ECOD (1.6)
PA [auth BC]PF00679e7nshBC3 A: a+b two layersX: Alpha-beta plaitsH: EF-G C-terminal domain-like (From Topology)T: EF-G C-terminal domain-likeF: PF00679ECOD (1.6)
PA [auth BC]PF14492e7nshBC5 A: a+b two layersX: Alpha-beta plaitsH: EF-G C-terminal domain-like (From Topology)T: EF-G C-terminal domain-likeF: PF14492ECOD (1.6)
PA [auth BC]PF00009e7nshBC4 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00009ECOD (1.6)
QA [auth BD]PF00181e7nshBD2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
QA [auth BD]PF03947e7nshBD1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
RA [auth BG]PF01765e7nshBG1 A: a+b two layersX: RRF/tRNA synthetase additional domain-likeH: Ribosome recycling factor, RRF (From Topology)T: Ribosome recycling factor, RRFF: PF01765ECOD (1.6)
SA [auth BQ]PF00252e7nshBQ1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
UA [auth BE]PF00297e7nshBE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
VA [auth BF]PF00573e7nshBF1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
WA [auth BI]PF01281e7nshBI1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: PF01281ECOD (1.6)
YA [auth BK]PF00298e7nshBK1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
YA [auth BK]PF03946e7nshBK2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
ZA [auth BN]PF00572e7nshBN1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
AB [auth BO]PF00238e7nshBO1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
BB [auth BP]PF00828e7nshBP1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
CB [auth BR]PF01196e7nshBR1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: PF01196ECOD (1.6)
DB [auth BS]PF00861e7nshBS1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00861ECOD (1.6)
FB [auth BU]PF00453e7nshBU1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: PF00453ECOD (1.6)
GB [auth BV]PF00829e7nshBV1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
HB [auth BW]PF00237e7nshBW1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
IB [auth BX]PF00276e7nshBX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
B [auth BY]PF00467,PF17136e7nshBY1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF17136ECOD (1.6)
X [auth Bw]PF07147e7nshBw1 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PF07147ECOD (1.6)
BA [auth DL]PF16320e7nshDL1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
CA [auth EL]PF16320e7nshEL1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
DA [auth FL]PF16320e7nshFL1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
GA [auth HL]PF16320e7nshHL1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
TA [auth LL]PF00542e7nshLL1 A: a+b two layersX: ClpS-likeH: ClpS-related (From Topology)T: ClpS-relatedF: PF00542ECOD (1.6)
FA [auth GL]PF16320e7nshGL1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
Z [auth CL]PF16320e7nshCL1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
AA [auth B1]PF00830e7nshB11 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Mitoribosomal protein bL28mF: PF00830ECOD (1.6)
C [auth Ba]PF07147e7nshBa1 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PF07147ECOD (1.6)
EB [auth BT]PF01245e7nshBT1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01245ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth B0]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
E [auth Bb]PF01161Phosphatidylethanolamine-binding protein (PBP)Phosphatidylethanolamine-binding protein- Domain
G [auth Bd]PF09812Mitochondrial ribosomal protein L28 (MRP-L28)Mitochondrial ribosomal protein L28- Family
H [auth Be]PF09809Mitochondrial ribosomal protein L27 (MRP-L27)Mitochondrial ribosomal protein L27- Family
I [auth Bf]PF10210Mitochondrial 28S ribosomal protein S32 (MRP-S32)Mitochondrial 28S ribosomal protein S32- Family
J [auth Bg]PF05047Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8)Mitochondrial ribosomal protein L51 / S25 / CI-B8 domainThe proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ...The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.
Domain
L [auth Bi]PF04280Tim44-like domain (Tim44)Tim44-like domainTim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostati ...Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [1]. This family includes the C-terminal region of Tim44 that has been shown to form a stable proteolytic fragment in yeast. This region is also found in a set of smaller bacterial proteins. The molecular function of the bacterial members of this family is unknown but transport seems likely. The crystal structure of the C terminal of Tim44 has revealed a large hydrophobic pocket which might play an important role in interacting with the acyl chains of lipid molecules in the mitochondrial membrane [3].
Domain
M [auth Bj]PF1178839S mitochondrial ribosomal protein L46 (MRP-L46)39S mitochondrial ribosomal protein L46- Family
N [auth Bk]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
O [auth Bl]PF05046Mitochondrial large subunit ribosomal protein (Img2) (Img2)Mitochondrial large subunit ribosomal protein (Img2)This family of proteins have been identified as part of the mitochondrial large ribosomal subunit in yeast [1].Domain
P [auth Bm]PF10501Ribosomal subunit 39S (Ribosomal_L50)Ribosomal subunit 39SThe 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units [1]. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [2]. In E. coli, in the absenc ...The 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units [1]. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [2]. In E. coli, in the absence of the enzyme pseudouridine synthase (RluD) synthase, there is an accumulation of 50S and 30S subunits and the appearance of abnormal particles (62S and 39S), with concomitant loss of 70S ribosomes [2].
Domain
Q [auth Bn]PF10244Mitochondrial ribosomal subunit (MRP-L51)Mitochondrial ribosomal subunit- Family
R [auth Bo]PF18699Mitoribosomal protein mL52 (MRPL52)Mitoribosomal protein mL52- Family
S [auth Bp]PF1078039S ribosomal protein L53/MRP-L53 (MRP_L53)39S ribosomal protein L53/MRP-L53- Family
T [auth Bq]PF08561Mitochondrial ribosomal protein L37 (Ribosomal_L37)Mitochondrial ribosomal protein L37- Family
U [auth Bt]PF14978Mitochondrial ribosome protein 63 (MRP-63)Mitochondrial ribosome protein 63- Family
V [auth Bu]PF00472RF-1 domain (RF-1)RF-1 domain- Family
W [auth Bv]PF10147Growth arrest and DNA-damage-inducible proteins-interacting protein 1 (CR6_interact)Growth arrest and DNA-damage-inducible proteins-interacting protein 1- Family
Y [auth Bx]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
EA [auth B9]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
IA [auth B2]PF06984Mitochondrial 39-S ribosomal protein L47 (MRP-L47) (MRP-L47)Mitochondrial 39-S ribosomal protein L47 (MRP-L47)- Family
JA [auth B3]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
KA [auth B4]PF09776Mitochondrial ribosomal protein L55 (Mitoc_L55)Mitochondrial ribosomal protein L55- Family
LA [auth B5]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
MA [auth B6]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
NA [auth B7]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
PA [auth BC]PF00679Elongation factor G C-terminus (EFG_C)Elongation factor G C-terminusThis domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.Domain
PA [auth BC]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.Domain
PA [auth BC]PF14492Elongation Factor G, domain III (EFG_III)Elongation Factor G, domain IIIThis domain is found in Elongation Factor G. It shares a similar structure with domain V (Pfam:PF00679). Structural studies in drosophila indicate this is domain 3 [1].Domain
PA [auth BC]PF03144Elongation factor Tu domain 2 (GTP_EFTU_D2)Elongation factor Tu domain 2Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ...Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain.
Domain
PA [auth BC]PF03764Elongation factor G, domain IV (EFG_IV)Elongation factor G, domain IVThis domain is found in elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopts a ribosomal protein S5 domain 2-like fold.Domain
QA [auth BD]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
RA [auth BG]PF01765Ribosome recycling factor (RRF)Ribosome recycling factorThe ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth [1]. Thus ribosomes are "recycled" and ready for another round of protein synthe ...The ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth [1]. Thus ribosomes are "recycled" and ready for another round of protein synthesis.
Domain
SA [auth BQ]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
UA [auth BE]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
VA [auth BF]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
WA [auth BI]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
XA [auth BJ]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
YA [auth BK]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
ZA [auth BN]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
AB [auth BO]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
BB [auth BP]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
CB [auth BR]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
DB [auth BS]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
FB [auth BU]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
GB [auth BV]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
HB [auth BW]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
IB [auth BX]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
B [auth BY]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
B [auth BY]PF00467KOW motif (KOW)KOW motif- Family
X [auth Bw]PF07147Mitochondrial 28S ribosomal protein S30 (PDCD9) (PDCD9)Mitochondrial 28S ribosomal protein S30 (PDCD9)- Family
PF16320Ribosomal protein L7/L12 dimerisation domain (Ribosomal_L12_N)Ribosomal protein L7/L12 dimerisation domainThis is the N-terminal dimerisation domain of ribosomal protein L7/L12 [1].Domain
PF00542Ribosomal protein L7/L12 C-terminal domain (Ribosomal_L12)Ribosomal protein L7/L12 C-terminal domain- Domain
AA [auth B1]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
C [auth Ba]PF07147Mitochondrial 28S ribosomal protein S30 (PDCD9) (PDCD9)Mitochondrial 28S ribosomal protein S30 (PDCD9)- Family
EB [auth BT]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B0]Mitochondrial ribosomal protein L27
D [auth B8]Mitochondrial ribosomal protein L35- -
E [auth Bb]Mitochondrial ribosomal protein L38- -
F [auth Bc]Mitochondrial ribosomal protein L39 - -
G [auth Bd]Mitochondrial ribosomal protein L40- -
H [auth Be]Mitochondrial ribosomal protein L41
I [auth Bf]mL42- -
J [auth Bg]Mitochondrial ribosomal protein L43
K [auth Bh]mL44
L [auth Bi]Mitochondrial ribosomal protein L45- -
M [auth Bj]Mitochondrial ribosomal protein L46 -
N [auth Bk]39S ribosomal protein L48, mitochondrial- -
O [auth Bl]Mrpl34
P [auth Bm]Mitochondrial ribosomal protein L50- -
Q [auth Bn]Mitochondrial ribosomal protein L51
R [auth Bo]mL52
S [auth Bp]mL53- -
T [auth Bq]mL54 -
U [auth Bt]Mitochondrial ribosomal protein L57
V [auth Bu]mL62 (ICT1)
W [auth Bv]mL64-
Y [auth Bx]Mitochondrial ribosomal protein S18A
EA [auth B9]Ribosomal protein
HA [auth BA]16S rRNA---
IA [auth B2]Mitochondrial ribosomal protein L47
JA [auth B3]uL30m
KA [auth B4]bL31m -
LA [auth B5]bL32m
MA [auth B6]bL33m
NA [auth B7]Mitochondrial ribosomal protein L34
OA [auth BB]CP tRNAPhe---
PA [auth BC]Ribosome-releasing factor 2, mitochondrial
QA [auth BD]uL2m
RA [auth BG]Ribosome-recycling factor, mitochondrial
SA [auth BQ]uL16m
UA [auth BE]ICT1
VA [auth BF]Mitochondrial ribosomal protein L4
WA [auth BI]Mitochondrial ribosomal protein L9
XA [auth BJ]Mitochondrial ribosomal protein L10- -
YA [auth BK]Mitochondrial ribosomal protein L11
ZA [auth BN]uL13m
AB [auth BO]uL14m
BB [auth BP]uL15m---
CB [auth BR]bL17m
DB [auth BS]Mitochondrial ribosomal protein L18
FB [auth BU]Mitochondrial ribosomal protein L20
GB [auth BV]Mitochondrial ribosomal protein L21
HB [auth BW]uL22m
IB [auth BX]uL23m---
B [auth BY]uL24m
X [auth Bw]39S ribosomal protein S30, mitochondrial
Mitochondrial ribosomal protein L12
AA [auth B1]Mitochondrial ribosomal protein L28 -
C [auth Ba]Mitochondrial ribosomal protein L37
EB [auth BT]Mitochondrial ribosomal protein L19

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B0]IPR001684Large ribosomal subunit protein bL27Family
D [auth B8]IPR019338Large ribosomal subunit protein bL35mFamily
E [auth Bb]IPR036610PEBP-like superfamilyHomologous Superfamily
E [auth Bb]IPR008914Phosphatidylethanolamine-binding proteinFamily
E [auth Bb]IPR035810Phosphatidylethanolamine-binding protein, eukaryoticFamily
F [auth Bc]IPR012676TGS-likeHomologous Superfamily
F [auth Bc]IPR018163Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamilyHomologous Superfamily
F [auth Bc]IPR004095TGSDomain
F [auth Bc]IPR012675Beta-grasp domain superfamilyHomologous Superfamily
G [auth Bd]IPR019192Large ribosomal subunit protein mL40Family
G [auth Bd]IPR039145Large ribosomal subunit protein mL40, metazoa/plantsFamily
H [auth Be]IPR019189Large ribosomal subunit protein mL41Family
I [auth Bf]IPR019346Large ribosomal subunit protein mL42Family
J [auth Bg]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
J [auth Bg]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
J [auth Bg]IPR039927Large ribosomal subunit protein mL43Family
K [auth Bh]IPR044444Large ribosomal subunit protein mL44, dsRNA binding domain, metazoaDomain
K [auth Bh]IPR014720Double-stranded RNA-binding domainDomain
K [auth Bh]IPR036389Ribonuclease III, endonuclease domain superfamilyHomologous Superfamily
L [auth Bi]IPR032710NTF2-like domain superfamilyHomologous Superfamily
L [auth Bi]IPR007379Tim44-like domainDomain
M [auth Bj]IPR015797NUDIX hydrolase-like domain superfamilyHomologous Superfamily
M [auth Bj]IPR021757Large ribosomal subunit protein mL46, N-terminalDomain
M [auth Bj]IPR040008Large ribosomal subunit protein mL46Family
M [auth Bj]IPR033650Large ribosomal subunit protein mL46, NUDIX domainDomain
N [auth Bk]IPR027486Small ribosomal subunit protein uS10 domainDomain
N [auth Bk]IPR027487Large ribosomal subunit protein mL48Family
N [auth Bk]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
O [auth Bl]IPR007740Large ribosomal subunit protein mL49Family
P [auth Bm]IPR018305Large ribosomal subunit protein mL50Family
Q [auth Bn]IPR019373Large ribosomal subunit protein mL51Family
R [auth Bo]IPR034596Large ribosomal subunit protein mL52Family
S [auth Bp]IPR019716Large ribosomal subunit protein mL53Family
T [auth Bq]IPR013870Large ribosomal subunit protein mL54Family
U [auth Bt]IPR016576Large ribosomal subunit protein mL63Family
V [auth Bu]IPR000352Peptide chain release factor class IDomain
W [auth Bv]IPR018472Large ribosomal subunit protein mL64Family
W [auth Bv]IPR043035Large ribosomal subunit protein mL64 domain superfamilyHomologous Superfamily
Y [auth Bx]IPR001648Small ribosomal subunit protein bS18Family
Y [auth Bx]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
EA [auth B9]IPR000473Large ribosomal subunit protein bL36Family
EA [auth B9]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
IA [auth B2]IPR038340MRP-L47 superfamily, mitochondrialHomologous Superfamily
IA [auth B2]IPR010729Large ribosomal subunit protein uL29m, mitochondrialFamily
JA [auth B3]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
JA [auth B3]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
JA [auth B3]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
KA [auth B4]IPR044884Large ribosomal subunit protein mL55 superfamilyHomologous Superfamily
KA [auth B4]IPR018615Large ribosomal subunit protein mL55Family
LA [auth B5]IPR002677Large ribosomal subunit protein bL32Family
LA [auth B5]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
MA [auth B6]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
MA [auth B6]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
MA [auth B6]IPR001705Large ribosomal subunit protein bL33Family
NA [auth B7]IPR000271Large ribosomal subunit protein bL34Family
PA [auth BC]IPR005517Translation elongation factor EFG/EF2, domain IVDomain
PA [auth BC]IPR000795Translational (tr)-type GTP-binding domainDomain
PA [auth BC]IPR000640Elongation factor EFG, domain V-likeDomain
PA [auth BC]IPR031157Tr-type G domain, conserved siteConserved Site
PA [auth BC]IPR009022Elongation factor G, domain IIIDomain
PA [auth BC]IPR035647EF-G domain III/V-likeHomologous Superfamily
PA [auth BC]IPR041095Elongation Factor G, domain IIDomain
PA [auth BC]IPR004161Translation elongation factor EFTu-like, domain 2Domain
PA [auth BC]IPR030851Ribosome-releasing factor 2, mitochondrialFamily
PA [auth BC]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
PA [auth BC]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
PA [auth BC]IPR005225Small GTP-binding protein domainDomain
PA [auth BC]IPR035649EFG, domain VDomain
PA [auth BC]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
PA [auth BC]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
QA [auth BD]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
QA [auth BD]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
QA [auth BD]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
QA [auth BD]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
QA [auth BD]IPR002171Large ribosomal subunit protein uL2Family
RA [auth BG]IPR023584Ribosome recycling factor domainDomain
RA [auth BG]IPR036191RRF superfamilyHomologous Superfamily
RA [auth BG]IPR002661Ribosome recycling factorFamily
SA [auth BQ]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
SA [auth BQ]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
SA [auth BQ]IPR016180Large ribosomal subunit protein uL16 domainDomain
SA [auth BQ]IPR047873Large ribosomal subunit protein uL16Family
UA [auth BE]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
UA [auth BE]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
UA [auth BE]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
UA [auth BE]IPR000597Large ribosomal subunit protein uL3Family
VA [auth BF]IPR013005Large ribosomal subunit protein uL4-likeFamily
VA [auth BF]IPR002136Large ribosomal subunit protein uL4Family
VA [auth BF]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
WA [auth BI]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
WA [auth BI]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
WA [auth BI]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
WA [auth BI]IPR000244Large ribosomal subunit protein bL9Family
XA [auth BJ]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
XA [auth BJ]IPR001790Large ribosomal subunit protein uL10Family
XA [auth BJ]IPR047865Large ribosomal subunit protein uL10, bacterial typeFamily
YA [auth BK]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
YA [auth BK]IPR000911Ribosomal protein uL11Family
YA [auth BK]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
YA [auth BK]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
ZA [auth BN]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
ZA [auth BN]IPR005822Large ribosomal subunit protein uL13Family
ZA [auth BN]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
ZA [auth BN]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
AB [auth BO]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
AB [auth BO]IPR000218Large ribosomal subunit protein uL14Family
CB [auth BR]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
CB [auth BR]IPR000456Large ribosomal subunit protein bL17Family
DB [auth BS]IPR005484Large ribosomal subunit protein uL18Family
DB [auth BS]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
FB [auth BU]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
FB [auth BU]IPR005813Large ribosomal subunit protein bL20Family
GB [auth BV]IPR028909Large ribosomal subunit protein bL21-likeFamily
GB [auth BV]IPR001787Large ribosomal subunit protein bL21Family
GB [auth BV]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
HB [auth BW]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
HB [auth BW]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
HB [auth BW]IPR001063Large ribosomal subunit protein uL22Family
B [auth BY]IPR003256Large ribosomal subunit protein uL24Family
B [auth BY]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
B [auth BY]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
B [auth BY]IPR005824KOWDomain
B [auth BY]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
B [auth BY]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
X [auth Bw]IPR039982Large ribosomal subunit protein mL65Family
X [auth Bw]IPR010793Large ribosomal subunit protein mL37/mL65Family
IPR008932Large ribosomal subunit protein bL12, oligomerizationDomain
IPR013823Large ribosomal subunit protein bL12, C-terminalDomain
IPR036235Large ribosomal subunit protein bL12, oligomerization domain superfamilyHomologous Superfamily
IPR014719Ribosomal protein bL12, C-terminal/adaptor protein ClpS-likeHomologous Superfamily
IPR000206Large ribosomal subunit protein bL12Family
AA [auth B1]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
AA [auth B1]IPR026569Large ribosomal subunit protein bL28Family
AA [auth B1]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
C [auth Ba]IPR010793Large ribosomal subunit protein mL37/mL65Family
EB [auth BT]IPR001857Large ribosomal subunit protein bL19Family
EB [auth BT]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
EB [auth BT]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily