X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2932.08 M AmSO4 0.9 % (v/v) 1,6-hexanediol 0.1 M HEPES pH 7.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 61.411α = 90
b = 54.566β = 99.54
c = 72.54γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2016-03-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.918409BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1242.851000.11455.281.932213
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0711000.56261.651.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT242.8530597158399.80.191620.18920.23876RANDOM25.538
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.96-2.26-1.661.39
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.316
r_dihedral_angle_4_deg17.941
r_dihedral_angle_3_deg15.451
r_long_range_B_refined7.677
r_long_range_B_other7.676
r_dihedral_angle_1_deg5.632
r_scangle_other4.956
r_mcangle_other3.413
r_mcangle_it3.408
r_scbond_it3.077
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.316
r_dihedral_angle_4_deg17.941
r_dihedral_angle_3_deg15.451
r_long_range_B_refined7.677
r_long_range_B_other7.676
r_dihedral_angle_1_deg5.632
r_scangle_other4.956
r_mcangle_other3.413
r_mcangle_it3.408
r_scbond_it3.077
r_scbond_other3.076
r_mcbond_it2.2
r_mcbond_other2.184
r_angle_refined_deg1.599
r_angle_other_deg1.094
r_chiral_restr0.105
r_bond_refined_d0.015
r_gen_planes_refined0.008
r_gen_planes_other0.004
r_bond_other_d0.003
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3490
Nucleic Acid Atoms
Solvent Atoms313
Heterogen Atoms132

Software

Software
Software NamePurpose
REFMACrefinement
PHENIXrefinement
XDSdata reduction
SCALAdata scaling
PHASERphasing