6KM0

Human Carbonic Anhydrase II V143I variant 07 atm CO2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP82931.3 M sodium citrate, 100 mM Tris-HCl
Crystal Properties
Matthews coefficientSolvent content
2.0941.27

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.3α = 90
b = 41.496β = 104.225
c = 72.144γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2702011-05-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCHESS BEAMLINE F10.9179CHESSF1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
10.935093.80.08420.445.6152384
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
10.930.950.5042.17

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE3U7C0.9329.166152358745593.7250.1080.10770.121911.89
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.0120.0020.0020.007
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free53.415
r_dihedral_angle_2_deg33.431
r_dihedral_angle_4_deg21.489
r_sphericity_bonded11.236
r_dihedral_angle_3_deg10.656
r_dihedral_angle_1_deg7.078
r_rigid_bond_restr6.43
r_lrange_it4.903
r_lrange_other4.209
r_scangle_it3.291
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free53.415
r_dihedral_angle_2_deg33.431
r_dihedral_angle_4_deg21.489
r_sphericity_bonded11.236
r_dihedral_angle_3_deg10.656
r_dihedral_angle_1_deg7.078
r_rigid_bond_restr6.43
r_lrange_it4.903
r_lrange_other4.209
r_scangle_it3.291
r_scangle_other3.287
r_scbond_it2.641
r_scbond_other2.64
r_angle_refined_deg2.582
r_mcangle_other2.406
r_mcangle_it2.403
r_mcbond_it1.997
r_mcbond_other1.545
r_angle_other_deg1.401
r_symmetry_nbd_refined0.374
r_nbd_refined0.323
r_nbd_other0.303
r_symmetry_nbd_other0.2
r_nbtor_refined0.185
r_symmetry_xyhbond_nbd_refined0.178
r_chiral_restr0.171
r_xyhbond_nbd_refined0.149
r_symmetry_nbtor_other0.081
r_metal_ion_refined0.071
r_bond_refined_d0.03
r_symmetry_xyhbond_nbd_other0.029
r_gen_planes_refined0.014
r_gen_planes_other0.006
r_bond_other_d0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2050
Nucleic Acid Atoms
Solvent Atoms355
Heterogen Atoms14

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
REFMACphasing