6KM1

Human Carbonic Anhydrase II V143I variant 13 atm CO2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP82931.3 M sodium citrate, 100 mM Tris-HCl
Crystal Properties
Matthews coefficientSolvent content
2.0941.14

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.286α = 90
b = 41.446β = 104.181
c = 72.076γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2702011-05-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCHESS BEAMLINE F10.9179CHESSF1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.055094.10.06832.367.7106259
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.051.070.4544.76

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE3U7C1.0529.147106239534794.0830.1040.10350.121411.403
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.0090.0120.003
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free59.503
r_dihedral_angle_2_deg34.104
r_dihedral_angle_4_deg21.267
r_sphericity_bonded11.752
r_dihedral_angle_3_deg11.215
r_dihedral_angle_1_deg6.872
r_rigid_bond_restr6.799
r_lrange_it6.252
r_lrange_other5.191
r_scangle_other3.957
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free59.503
r_dihedral_angle_2_deg34.104
r_dihedral_angle_4_deg21.267
r_sphericity_bonded11.752
r_dihedral_angle_3_deg11.215
r_dihedral_angle_1_deg6.872
r_rigid_bond_restr6.799
r_lrange_it6.252
r_lrange_other5.191
r_scangle_other3.957
r_scangle_it3.954
r_mcangle_other3.205
r_mcbond_it3.202
r_mcangle_it3.201
r_scbond_other2.824
r_scbond_it2.82
r_angle_refined_deg2.574
r_mcbond_other1.51
r_angle_other_deg1.308
r_symmetry_nbd_refined0.361
r_nbd_refined0.328
r_nbd_other0.303
r_symmetry_xyhbond_nbd_refined0.207
r_symmetry_nbd_other0.198
r_nbtor_refined0.185
r_xyhbond_nbd_refined0.156
r_chiral_restr0.15
r_symmetry_nbtor_other0.081
r_metal_ion_refined0.053
r_bond_refined_d0.029
r_gen_planes_refined0.014
r_symmetry_xyhbond_nbd_other0.009
r_gen_planes_other0.006
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2050
Nucleic Acid Atoms
Solvent Atoms359
Heterogen Atoms17

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
REFMACphasing