6TSQ

Marasmius oreades agglutinin (MOA) activated by manganese (II)

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6.5	293.15	0.1 M cacodylate/HCl pH 6.5, 16% PEG 8000, 0.15M sodium acetate, 5 mM MnCl2, 12.5% DMSO, 5mM DTT

Crystal Properties
Matthews coefficient	Solvent content
3.3	62.5

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 120.952	α = 90
b = 120.952	β = 90
c = 99.477	γ = 120

Symmetry
Space Group	P 63 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARMOSAIC 225 mm CCD		2012-10-08	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID23-1	1.85051	ESRF	ID23-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.85	46.3	90.2	0.046	0.055	0.03	0.998	22.8	3.9		63674

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.85	1.89	57.8		0.256	0.361	0.256	0.853		1.9

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	3EF2	1.85	46.3	34498	1728	93.137	0.157	0.1558	0.1824	17.957

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.518	0.259		0.518		-1.679

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	37.324
r_dihedral_angle_3_deg	13.521
r_dihedral_angle_4_deg	10.317
r_dihedral_angle_1_deg	8.814
r_lrange_it	4.117
r_lrange_other	4.037
r_scangle_it	3.136
r_scangle_other	3.135
r_scbond_it	2.065
r_scbond_other	2.065
r_mcangle_it	1.826
r_mcangle_other	1.826
r_mcbond_it	1.357
r_mcbond_other	1.357
r_angle_refined_deg	0.815
r_symmetry_xyhbond_nbd_other	0.796
r_angle_other_deg	0.606
r_symmetry_metal_ion_refined	0.482
r_metal_ion_refined	0.351
r_symmetry_nbd_refined	0.263
r_nbd_refined	0.251
r_nbd_other	0.235
r_symmetry_nbd_other	0.184
r_nbtor_refined	0.172
r_xyhbond_nbd_refined	0.17
r_symmetry_xyhbond_nbd_refined	0.128
r_symmetry_nbtor_other	0.104
r_gen_planes_refined	0.041
r_gen_planes_other	0.034
r_bond_refined_d	0.013
r_chiral_restr	0.012
r_bond_other_d	0.003

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2280
Nucleic Acid Atoms
Solvent Atoms	226
Heterogen Atoms	117

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing