6TSR

Marasmius oreades agglutinin (MOA) activated by manganese (II) and calcium

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6.5	293.15	0.1 M cacodylate/HCl pH 6.5, 16% PEG 8000, 0.15M sodium acetate, 10 mM MnCl2, 10 mM CaCl2, 12.5% DMSO, 5mM DTT

Crystal Properties
Matthews coefficient	Solvent content
3.3	63

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 121.569	α = 90
b = 121.569	β = 90
c = 99.584	γ = 120

Symmetry
Space Group	P 63 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARMOSAIC 225 mm CCD		2012-10-08	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID23-1	1.85051	ESRF	ID23-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.85	46.5	97.5	0.061	0.055	0.03	0.998	22.8	3.2		68797

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.85	1.89	87.3		0.492	0.677	0.463	0.623		2.6

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	3EF2	1.85	46.5	36948	1934	98.747	0.153	0.1517	0.1755	18.846

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.465	0.232		0.465		-1.507

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	37.635
r_dihedral_angle_4_deg	14.992
r_dihedral_angle_3_deg	13.432
r_dihedral_angle_1_deg	8.841
r_lrange_it	4.448
r_lrange_other	4.371
r_scangle_it	3.724
r_scangle_other	3.723
r_scbond_it	2.46
r_scbond_other	2.459
r_mcangle_it	1.978
r_mcangle_other	1.978
r_mcbond_it	1.444
r_mcbond_other	1.441
r_angle_refined_deg	0.954
r_angle_other_deg	0.891
r_symmetry_nbd_refined	0.394
r_nbd_refined	0.214
r_symmetry_metal_ion_refined	0.193
r_symmetry_nbd_other	0.184
r_nbtor_refined	0.171
r_nbd_other	0.152
r_xyhbond_nbd_refined	0.136
r_metal_ion_refined	0.136
r_symmetry_xyhbond_nbd_other	0.13
r_symmetry_xyhbond_nbd_refined	0.111
r_symmetry_nbtor_other	0.107
r_gen_planes_refined	0.041
r_gen_planes_other	0.034
r_bond_refined_d	0.014
r_chiral_restr	0.012
r_bond_other_d	0.004

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2280
Nucleic Acid Atoms
Solvent Atoms	212
Heterogen Atoms	128

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing