2FVV

Human Diphosphoinositol polyphosphate phosphohydrolase 1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.171 
  • R-Value Observed: 0.171 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 2.2 of the entry. See complete history


Literature

Crystal structure of human diphosphoinositol phosphatase 1

Thorsell, A.G.Persson, C.Graslund, S.Hammarstrom, M.Busam, R.D.Hallberg, B.M.

(2009) Proteins 77: 242-246


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Diphosphoinositol polyphosphate phosphohydrolase 1194Homo sapiensMutation(s): 0 
Gene Names: NUDT3DIPPDIPP1
EC: 3.6.1.52 (PDB Primary Data), 3.6.1 (PDB Primary Data), 3.6.1.62 (UniProt), 3.6.1.61 (UniProt), 3.6.1.59 (UniProt), 3.6.1.10 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for O95989 (Homo sapiens)
Explore O95989 
Go to UniProtKB:  O95989
PHAROS:  O95989
GTEx:  ENSG00000272325 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO95989
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.171 
  • R-Value Observed: 0.171 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 48.653α = 90
b = 59.9β = 90
c = 61.735γ = 90
Software Package:
Software NamePurpose
SHELXrefinement
PDB_EXTRACTdata extraction
PROTEUM PLUSdata reduction
SAINTdata reduction
XDSdata reduction
SADABSdata scaling
XSCALEdata scaling
SHELXDphasing
SHELXL-97refinement

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2006-03-11
    Type: Initial release
  • Version 1.1: 2008-04-01
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2018-05-23
    Changes: Data collection
  • Version 2.0: 2019-04-03
    Changes: Advisory, Atomic model, Data collection
  • Version 2.1: 2020-10-14
    Changes: Database references, Derived calculations, Structure summary
  • Version 2.2: 2024-03-13
    Changes: Data collection, Database references